PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2928
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 270aa    MW: 30081.8 Da    PI: 6.1679
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2928genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.41.1e-54851891102
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw++q   ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+f+leltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi
  Gh_D11G2928  85 QLQMFWANQmqeIEHASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFVLELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 182
                  89******9778899*********************************************************************************** PP

        NF-YC  96 vprdelk 102
                  +prdelk
  Gh_D11G2928 183 IPRDELK 189
                  ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.9E-3463179IPR009072Histone-fold
PfamPF008088.8E-21107170IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.9E-37108185IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDRSEQTEQQ QQQQQPVMGV VAGTGPMGYS TGPYQAAPVA ASGTPATAVP SPTQPQATFS  60
GSPHQLAYQQ AQQFHHQQQQ QQHQQLQMFW ANQMQEIEHA SDFKNHSLPL ARIKKIMKAD  120
EDVRMISAEA PVIFAKACEI FVLELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV  180
DIIPRDELKE EGLGVTKATI PFVGSPTDMP YYYVPQHPVG HAGMTMGKPV DQAALYPGQQ  240
PRPPVAFVPW PHGQPQPPQP QQSEQQQSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5693185395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.53250.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434649.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_012434650.10.0PREDICTED: nuclear transcription factor Y subunit C-2-like
TrEMBLA0A0D2PIP20.0A0A0D2PIP2_GOSRA; Uncharacterized protein
STRINGGorai.007G336800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-81nuclear factor Y, subunit C2