PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G2866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 484aa MW: 54166.4 Da PI: 7.9025 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.5e-14 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed lv++v+ +G g+W+++ + g+ R++k+c++rw ++l Gh_D11G2866 43 KGPWTAIEDAVLVEYVRSHGEGSWNAVQKNTGLARCGKSCRLRWVNHL 90 79*******************************************996 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 7.8e-16 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+++++++++++G++ W++ a ++ gRt++++k++w++ Gh_D11G2866 96 KGSFSPEEEKIIIELHAKMGNK-WARMATQLP-GRTDNEIKNYWNT 139 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.832 | 38 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.41E-28 | 40 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-12 | 42 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-13 | 43 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 44 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-9 | 45 | 90 | No hit | No description |
PROSITE profile | PS51294 | 25.137 | 91 | 145 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-16 | 95 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 96 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 98 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.43E-11 | 98 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MMMMMGGNNQ FTAQNEGGEF LSSNGMNSSG VGGGREGEIP LKKGPWTAIE DAVLVEYVRS 60 HGEGSWNAVQ KNTGLARCGK SCRLRWVNHL RPNLKKGSFS PEEEKIIIEL HAKMGNKWAR 120 MATQLPGRTD NEIKNYWNTR VKRRQRQGLP LYPPHVQPFY SQHQHRQRHS HPPPTTAPNS 180 CFSFQTPIVS PHTSNPMPLH PLHIPHRPPP QNFLYNPHSA LTKPPPPLQS PNSASTPPPL 240 PSPSASTPHH ISPLHSPHNP PPSPTLPLIN YPNTTTDDDF FHSNKRFKHG GLQSNNYNNN 300 HLDATSSRFT LPFSPMQHYS NRMTLDLPSS SRTTFNHHPH QDSGDFYPLK MDLRSNQIND 360 DGLLENMLQE AQALAANGNG GNNEIPKEMM YAAQNEEDYS RLINIDGPSS FGMAIPEWCN 420 DNGESSERQP SAIIDSENHL ALDMHHIASL YPADISPNHA ARSSSVRSWD NFPALEQSRF 480 LVKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 41 | 144 | 5 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615992 | 5e-83 | JX615992.1 Gossypium hirsutum clone NBRI_GE60319 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488302.1 | 0.0 | PREDICTED: myb-like protein A | ||||
TrEMBL | A0A0D2R2P1 | 0.0 | A0A0D2R2P1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G312400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5100 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 4e-69 | myb domain protein 101 |