PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2839
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 705aa    MW: 76372.9 Da    PI: 6.1062
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2839genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16442488455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN++++ L+el+P++      K++Ka++L +A++Y+k Lq
  Gh_D11G2839 442 VHNLSERRRRDRINEKMHALQELIPNC-----NKVDKASMLDEAIDYLKTLQ 488
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.1E-20436497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.412438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-20441511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.38E-17441492No hitNo description
PfamPF000102.8E-14442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-18444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MPLSELYRMA RGKLDSSQDK NPSNSTDPSI VPEDDFFELV WENGQISMQG QSSVARKVPA  60
CNSLQSHSFK IRDKYIGNGG NSSKMGKFGV VDAVSSEVPM SAPSHDDDVV PWLKYSENEC  120
SDMFPGLSGL TTNKIPTDGS LASFNQRRQS ISDSFTVSLN AAADFKQGKL AKVPKPADDE  180
ARLRSGTSES PQLCQVSSSY LRSRNLESIG NNSSHAFFRD TMGVQPSDET LRGVKMQKQD  240
PVAPCNNTVL MNFSHFSRPA ALVKASLQNI GAMARIESKE TGFAASTRGP VDSKAIDSNI  300
KLQRENFLHC HSTIVPMKTD IKQSEAKSLD EPVAAEPNDA ICEEYVLKSD KISSQVIDEN  360
ASKCLPESGK AVESVLAASV CCENSVERAS DDPVVHNLKR KNHDNEEFEC PSEDAEEEPV  420
GVKKAVPTRG VKGFKRSRAA EVHNLSERRR RDRINEKMHA LQELIPNCNK VDKASMLDEA  480
IDYLKTLQLQ VQIMSMRAGL YVPPMMLPTG MQHMHATQMA YFSSMGFGMG LGMGFGMPFP  540
ETNTIASAFP MVQVPPVCGA PFSGSGPHLS GSTAFHEMPG ANLPLYGLHG QGLPMSMPGA  600
PLFPIPGGHL MKSAIGLSAC GLGGPMDNMD SATASSSKDP IQNINSQVAQ NTNINSSMNQ  660
TSTQYQTANE SFQQPAEVQE NGRASEITGS VPFRSTDGDK KLPDR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434328.10.0PREDICTED: transcription factor PIF3
TrEMBLA0A0D2R2I00.0A0A0D2R2I0_GOSRA; Uncharacterized protein
STRINGGorai.007G309400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-73phytochrome interacting factor 3