PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G2082

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 349aa MW: 39645.7 Da PI: 4.8245

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G2082	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	180	223	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Gh_D11G2082 180 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 223 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-15	177	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-12	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	180	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-14	181	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-4	181	227	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MELSQHGFLE ELLAPRRDSW TTFSAGVTEF LPNGSWNFDS FDENPTLATS NLSFVAFSPP 60 PPPDQTPSFE CPFSDQPYPF VDGFTVRDMD SSYTNVNVVH PHTSPFSATQ QDFPSMVDDE 120 DQFGLLTIDH QQHSLEETKS RCKVEIEQTS NIQGFNMGDL LLGKKRAKTK KLEGQPSKNL 180 MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERINKL QEEDTKEGII 240 INQQSLLKNL KEQKPDEVLV RNSPKFDVER RDTDTRIDIC CATKPGLLLS TVNTLEALGL 300 EIQQCVISCF NDFSMQASCS EVEEQRTLIS SEDIKQALFR NAGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MELSQHGFLE ELLAPRRDSW TTFSAGVTEF LPNGSWNFDS FDENPTLATS NLSFVAFSPP  60
PPPDQTPSFE CPFSDQPYPF VDGFTVRDMD SSYTNVNVVH PHTSPFSATQ QDFPSMVDDE  120
DQFGLLTIDH QQHSLEETKS RCKVEIEQTS NIQGFNMGDL LLGKKRAKTK KLEGQPSKNL  180
MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERINKL QEEDTKEGII  240
INQQSLLKNL KEQKPDEVLV RNSPKFDVER RDTDTRIDIC CATKPGLLLS TVNTLEALGL  300
EIQQCVISCF NDFSMQASCS EVEEQRTLIS SEDIKQALFR NAGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	189	ERRRRKRL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25038	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016672251.1	0.0	PREDICTED: transcription factor bHLH61-like
Swissprot	Q9LSL1	4e-88	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A1U8I1X5	0.0	A0A1U8I1X5_GOSHI; transcription factor bHLH61-like
STRING	Gorai.007G229900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2043	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-90	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]