PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2055
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 678aa    MW: 75274.2 Da    PI: 7.2402
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2055genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12327383155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Gh_D11G2055 327 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 383
                  78*******************87776664446655.77******************98 PP
2AP241.72.8e-13428478355
          AP2   3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV +++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gh_D11G2055 428 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 478
                  9****99**********988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-14327393IPR016177DNA-binding domain
PfamPF008471.3E-9327383IPR001471AP2/ERF domain
CDDcd000181.55E-18327391No hitNo description
SMARTSM003801.1E-22328397IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12328392IPR001471AP2/ERF domain
PROSITE profilePS5103217.451328391IPR001471AP2/ERF domain
PRINTSPR003672.6E-6329340IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-16426487IPR016177DNA-binding domain
CDDcd000184.66E-23426488No hitNo description
SMARTSM003802.0E-30427492IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18427486IPR001471AP2/ERF domain
PROSITE profilePS5103219.111427486IPR001471AP2/ERF domain
PfamPF008479.4E-8428478IPR001471AP2/ERF domain
PRINTSPR003672.6E-6468488IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MKSMSNDDNN NNNNKSSNWL GFSLSSHMKM EVSNQGPNSN HKTQSAASGV TTAVPSSFFP  60
SPPSHLNYGL YYGVEGENGG LYSHFPVMPL KSDGSLCLME ALGRSQSQAM VPTSTPKLED  120
FFGGATMGTH HYESSDRETM ALSLDSMYYH QNPNQDHNSQ NCLDHLQHSS RQQHHQHQLQ  180
VQQYQYYSGY RNQEMLLAEE ADQETHVTDC NLQLPTMADD GSAAMKHWAS RNYSTEHSAM  240
NQKMIGCMGD NGADSGSIGA MAYGDLQSLS LSMSPGSQSS SVAGSQQISP SATDYAAMET  300
KKRGPEKVDQ KQIAHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR  360
QGGYDMEEKA ARAYDLAALK YWGPSTHINF PLENYQKELE EMKNMTRQEY VAHLRRKSSG  420
FSRGASMYRG VTSRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGAN  480
AVTNFDITRY DVERIMASST LLAGDLARRN KDIGPANEAI NHNLLAHNSY GETNISPKNN  540
GSQPDWKIVL HQSPEQQMEM KQANMIENYK RQDFSLAPDN LVGMDTINSG QREVDDSNKM  600
GTHFSNASSL LTSLSSSKQG SSGSLDRNSL PLPFAMPAPP TKLFTSSTNS LNSWIPSAQL  660
RPALTVPTVP VFTAWTDA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.249560.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144281e-113JX614428.1 Gossypium hirsutum clone NBRI_GE57792 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016746052.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-142CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D2SPU90.0A0A0D2SPU9_GOSRA; Uncharacterized protein
STRINGGorai.007G226500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31372863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-125AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]