PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G2012 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25538 Da PI: 8.5802 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.2 | 9.8e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e Gh_D11G2012 2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWNGNWHVCQAAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Gh_D11G2012 100 TVLR 103 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.882 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.2E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWNGN WHVCQAAVET VLRGGSLRSM PEFMAPTPAS 120 DEASEATCTD MWKLRETSTN LNSNCRFSNS RSRVSPKRKR VEEEFKKLQP SDLDLGLTPS 180 FSGKRVTDNR RPGTPSMNSE ESVTTTCFES VFADQQGQGS RGTDKKLLKL FV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 229 | DKKLLKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.206 | 0.0 | boll| leaf| ovule| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584284 | 1e-63 | JX584284.1 Gossypium hirsutum clone NBRI_GE17552 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016697296.1 | 1e-171 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 2e-90 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A1U8K445 | 1e-170 | A0A1U8K445_GOSHI; LOB domain-containing protein 38-like | ||||
STRING | Gorai.007G222000.1 | 1e-169 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-85 | LOB domain-containing protein 38 |