 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_D11G2011 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
GRAS |
| Protein Properties |
Length: 405aa MW: 45128.7 Da PI: 5.0263 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D11G2011 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 314.8 | 1.9e-96 | 2 | 402 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPilkfs 94
++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+ f++AL r a+ s+++k l++ ++++ n s ++ +++ f++++P+++f+
Gh_D11G2011 2 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALIVRAAK--SGTCKMLAAMANAHCNLSIDIHTFSVielasFVDLTPWHRFG 97
79****************************************************..8899999888888888666666665556688*********** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl...vakr 185
+ +aN aIleaveg + +Hi+D+++++++Q p+L++a+asR egpp +++T+ g ++++ ++ee+g++L +fA++ +v +ef+++ +a+
Gh_D11G2011 98 FTAANAAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIASRLEGPPLVKLTVAGGATEDvppmLDLSYEELGSKLINFARSRNVVLEFRAIpstYADG 195
******************************************************99988998888899***********************9984445 PP
GRAS 186 ledleleeLrvkp......gEalaVnlvlqlhrll................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
+++l +e+Lrv++ gEal++n++++lh+l+ e+ s++s r+ +Lk++++l P+vvv+v+++ad +s++++ r+ a+
Gh_D11G2011 196 FSSL-IEQLRVQHlvyaesGEALVINCHMMLHYLPeetlsplsnvnsnpysFEPSSTQSLRTMFLKALRGLDPTVVVLVDEDADFTSNNLVCRLRAAF 292
5555.55555555555559*******************************988899999999************************************ PP
GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
+y + +d++++ lp+ s++r+++E+ + ++i+nv+a+eg +r+er e +++W +r+++aGF+ v+++e+a +++k++l +++ g+ +++e++ lv
Gh_D11G2011 293 NYLWIPYDTVDTFLPQGSKQRQWYEAD-ICWKIENVIAHEGLQRVERLEPKSRWVQRMRNAGFRGVSFGEEAISEVKTMLDEHA-AGWGLKKEEDDLV 388
***************************.********************************************************.8999********* PP
GRAS 360 lgWkdrpLvsvSaW 373
l+Wk++++v+++aW
Gh_D11G2011 389 LTWKGHNVVFATAW 402
************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MEQLLVHCAN AIESNDATLA QQILWVLNNI APPDGDSNQR LTCAFLRALI VRAAKSGTCK 60
MLAAMANAHC NLSIDIHTFS VIELASFVDL TPWHRFGFTA ANAAILEAVE GYSVIHIVDL 120
SLTHCMQIPT LIDAIASRLE GPPLVKLTVA GGATEDVPPM LDLSYEELGS KLINFARSRN 180
VVLEFRAIPS TYADGFSSLI EQLRVQHLVY AESGEALVIN CHMMLHYLPE ETLSPLSNVN 240
SNPYSFEPSS TQSLRTMFLK ALRGLDPTVV VLVDEDADFT SNNLVCRLRA AFNYLWIPYD 300
TVDTFLPQGS KQRQWYEADI CWKIENVIAH EGLQRVERLE PKSRWVQRMR NAGFRGVSFG 360
EEAISEVKTM LDEHAAGWGL KKEEDDLVLT WKGHNVVFAT AWLPA
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ393538 | 2e-97 | GQ393538.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0503 SSR marker CGR5533 genomic sequence. |
