PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G1956 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 509aa MW: 56726.7 Da PI: 7.1785 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 158 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Gh_D11G1956 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.2 | 9.7e-14 | 250 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ k +g Gh_D11G1956 250 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTEIEAARAYDRAAIKCNG 300 89********.7******...5...334336**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-9 | 158 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-15 | 158 | 216 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-31 | 159 | 221 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-17 | 159 | 215 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.49E-11 | 159 | 214 | No hit | No description |
PROSITE profile | PS51032 | 17.701 | 159 | 215 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-9 | 250 | 300 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-17 | 250 | 309 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.94E-26 | 250 | 308 | No hit | No description |
SMART | SM00380 | 5.4E-32 | 251 | 314 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-16 | 251 | 308 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.646 | 251 | 308 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 252 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 290 | 310 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MWDLNDSPYQ QPRDDESEGC SSQKTSVDGD EDKGKRVGSV SNSSSSAVVV EDGSEEEEGE 60 RVKAALKKRS NKMIFGFPVP GEGVFTENSD PAPVTRQFFP LDQDPEMGAN CVGSGPGFPR 120 AHWVGVKFCQ SEPLPHAKSV EVSQPMKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG 180 KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFSIEDYE DDLKQMCNLT KEEFVHVLRR 240 QSAGFPRGSS KYRGVTLHKC GRWEARMGQL LGKKYVYLGL FDTEIEAARA YDRAAIKCNG 300 KDAVTNFDPR IYDNELNCGE TSGNAGDHNL DLSLGNSTSK QTNLELGGDR QIAMSDQHSL 360 PPEADWQYRE FRSKVNLQQE PCRSNGATHG RSDGYSEAET MQLLSQTHIQ SPASIKSNEM 420 QRYGQFRRPG DNNVFHIPPS SYQIHFPSSS SGGRIGSDLL LSISEQQWQS SPHQMFGNSA 480 ASSGFPSQIR PSSQTWLQKN GFHSLMRPS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.1388 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: It is detectable at low levels throughout the shoot apex and at enhanced levels in the inflorescence meristem, young floral buds and throughout the early stages of flower development and organogenesis. During floral organ differentiation it becomes spatially restricted to specific organ, tissue and cell types within the flower. | |||||
Uniprot | TISSUE SPECIFICITY: Sepals, petals, stamens, carpels, developing ovules, inflorescence stem, leaf and stem. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU532252 | 0.0 | EU532252.1 Gossypium barbadense clone I5-6 ISSR marker genomic sequence. | |||
GenBank | EU532253 | 0.0 | EU532253.1 Gossypium barbadense clone I6-1 ISSR marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491847.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like | ||||
Swissprot | P47927 | 1e-138 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A0D2SP71 | 0.0 | A0A0D2SP71_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G215900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-128 | AP2 family protein |