PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G1889

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 815aa MW: 88358.9 Da PI: 6.9352

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G1889	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	597	634	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Gh_D11G1889 597 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 634 664459******************************88 PP
2	BELL	92.1	5.3e-30	475	528	19	72
BELL 19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 V++rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ Gh_D11G1889 475 VERRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 528 99*************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.4E-75	372	526	IPR006563	POX domain
Pfam	PF07526	1.1E-49	377	525	IPR006563	POX domain
PROSITE profile	PS50071	12.568	575	638	IPR001356	Homeobox domain
CDD	cd00086	6.79E-13	578	639	No hit	No description
SMART	SM00389	1.2E-9	578	642	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.23E-17	580	645	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-28	581	644	IPR009057	Homeodomain-like
Pfam	PF05920	4.2E-18	595	634	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MGIATPPLVA SILSQESQPS KKIHHQIPIQ HKSNNSTNSM SQDYHQAAGI FSFSNGFERS 60 AVSHQEHQQQ QQQHLEQQIR RDKLRVQGFE PPPPPLVGIE EEESTSLPVY ETAGMLSEMF 120 NFPSGAAAAA AAATASTELL DQHVQPNYRA HRPAPGNTNE WYSNRQGAVG GLGQLGESKS 180 HITRDSLAQQ QQQLPSINAD SAAAMHLFLM NPQQRSPSPP PPPPATSSNT LHMLLPNPST 240 SLQGFNVSGP GGGFGTSTVL SPPQFTWVPG SAHEGGNNTD SQLSSLNEIG SVVEGQGLSL 300 SLSSSLQHLE AAKAEELGMG DGGLLYYNQG GGSAAQFHQY RNLGSHHHQT MHLQGGVGQN 360 QQVHHVGFGS SLGMVNVLRN SKYVKAAQEL LEEFCSVGRG QFKKNKFGRN NTNPSSDPGS 420 SGGAGGGGSS SSTKDLPPLS AADRIEHQRR KVKLLSMLDE ACNLFLYSPI FSFIVERRYN 480 HYCEQMQMVV NSFDLVMGFG AAVPYTALAQ KAMSRHFRCL KDAISAQLKH SCEMLGEKDG 540 AGSSGITKGE TPRLRMLEQS LRQQRAFNQM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF 600 LHPYPSDADK HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQETKE EGDHNNNNNN 660 NHTERERNPN NNNNAQTSTP STTAAPTTTT TTSVGKGSQI NATENDPSLI AINTPQCFSE 720 NQANPNATEV APPISQPFTT SIPHDSDIHH QRIAGTTVAA ADYGTTAGGN TDIGSSLIRL 780 GTTTAGDVSL TLGLRHAGNM PENTSSFSVR DFGGC

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MGIATPPLVA SILSQESQPS KKIHHQIPIQ HKSNNSTNSM SQDYHQAAGI FSFSNGFERS  60
AVSHQEHQQQ QQQHLEQQIR RDKLRVQGFE PPPPPLVGIE EEESTSLPVY ETAGMLSEMF  120
NFPSGAAAAA AAATASTELL DQHVQPNYRA HRPAPGNTNE WYSNRQGAVG GLGQLGESKS  180
HITRDSLAQQ QQQLPSINAD SAAAMHLFLM NPQQRSPSPP PPPPATSSNT LHMLLPNPST  240
SLQGFNVSGP GGGFGTSTVL SPPQFTWVPG SAHEGGNNTD SQLSSLNEIG SVVEGQGLSL  300
SLSSSLQHLE AAKAEELGMG DGGLLYYNQG GGSAAQFHQY RNLGSHHHQT MHLQGGVGQN  360
QQVHHVGFGS SLGMVNVLRN SKYVKAAQEL LEEFCSVGRG QFKKNKFGRN NTNPSSDPGS  420
SGGAGGGGSS SSTKDLPPLS AADRIEHQRR KVKLLSMLDE ACNLFLYSPI FSFIVERRYN  480
HYCEQMQMVV NSFDLVMGFG AAVPYTALAQ KAMSRHFRCL KDAISAQLKH SCEMLGEKDG  540
AGSSGITKGE TPRLRMLEQS LRQQRAFNQM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF  600
LHPYPSDADK HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQETKE EGDHNNNNNN  660
NHTERERNPN NNNNAQTSTP STTAAPTTTT TTSVGKGSQI NATENDPSLI AINTPQCFSE  720
NQANPNATEV APPISQPFTT SIPHDSDIHH QRIAGTTVAA ADYGTTAGGN TDIGSSLIRL  780
GTTTAGDVSL TLGLRHAGNM PENTSSFSVR DFGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	584	642	5	63	Homeobox protein Meis2
3k2a_B	2e-16	584	642	5	63	Homeobox protein Meis2
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269\|PubMed:17873098}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016697058.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_016697059.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-178	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U8K8U1	0.0	A0A1U8K8U1_GOSHI; BEL1-like homeodomain protein 4
STRING	Gorai.007G207200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-160	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]