PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1851
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 324aa    MW: 35772.9 Da    PI: 8.4858
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1851genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1062.3e-33115169459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +rYkeClkNhAa +Ggh+vDGCgEfmps geegt++alkCaAC+CHR+FHR+e + 
  Gh_D11G1851 115 IRYKECLKNHAAGMGGHVVDGCGEFMPS-GEEGTPEALKCAACECHRSFHRKEING 169
                  79*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-21113168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-30115167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-31116167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.313117166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.51E-20244318IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-29245318IPR009057Homeodomain-like
PROSITE profilePS500718.73255319IPR001356Homeobox domain
TIGRFAMsTIGR015658.8E-28257314IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MELRGQDNKE MGMPSSFSCK NQLNKDSYSS APVNSATGER RRDRTVHGDP NLPQTLDDPL  60
SVPNPRRDPD PDPVSASTAT TGEIAAAADS RSPPTPEPQP VAGPTSATIS FSPLIRYKEC  120
LKNHAAGMGG HVVDGCGEFM PSGEEGTPEA LKCAACECHR SFHRKEINGE SQYAPSSYYY  180
TNNNNTRRNA VRPPPRATPL HHQRFSLGLS ASPPAMSVAP LMMSFGGGGQ AESSSEDLNM  240
FHFSEGGQQP SHPHSSKKRF RTKFSQEQKN KMMEFADKLG WKIQKQDDEQ VQQFCDQVGV  300
KRQVLKVWMH NNKQAMKRTN VRDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-232563131673ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.262190.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6149440.0JX614944.1 Gossypium hirsutum clone NBRI_GE58680 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697010.10.0PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW73e-70ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A1U8K3D30.0A0A1U8K3D3_GOSHI; zinc-finger homeodomain protein 6-like
STRINGGorai.007G202500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65152543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.17e-70homeobox protein 24