PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1800
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 1432aa    MW: 157136 Da    PI: 5.9277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1800genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.3e-0614091432226
                   -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                   ++++C+ f+++G+Ck G+ C++ H+
  Gh_D11G1800 1409 GQRICK-FYESGYCKKGAACRYWHP 1432
                   6899**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.9E-964124IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.99E-864123IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.52969135IPR019787Zinc finger, PHD-finger
CDDcd155688.99E-1971116No hitNo description
SMARTSM002496.7E-771117IPR001965Zinc finger, PHD-type
PROSITE patternPS01359072132IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475922.4E-20292368IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.103.4E-24292372IPR003121SWIB/MDM2 domain
PfamPF022017.4E-15309367IPR003121SWIB/MDM2 domain
SMARTSM001510.0016310372IPR019835SWIB domain
PROSITE profilePS5136023.943429561IPR004343Plus-3 domain
SMARTSM007193.5E-42429538IPR004343Plus-3 domain
SuperFamilySSF1590422.35E-30430558IPR004343Plus-3 domain
PfamPF031268.3E-23434536IPR004343Plus-3 domain
SuperFamilySSF552772.62E-16689748IPR003169GYF domain
CDDcd000728.40E-17692749No hitNo description
PROSITE profilePS5082915.09692746IPR003169GYF domain
SMARTSM004441.0E-15693748IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.2E-18694748IPR003169GYF domain
PfamPF022132.4E-12694738IPR003169GYF domain
PROSITE profilePS5010314.78414071432IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.18E-614071431IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1432 aa     Download sequence    Send to blast
MDNSQLVGNA DVVVRGAAGA TAEAGNGVTV VEMSAGKRRR GRPPRNQVRT TSLSAPPPPP  60
QRKDEDDEED VCFICFDGGS LVLCDRRGCP KAYHPACIKR DEAFFKSKAK WNCGWHICST  120
CQKASYYMCY TCTYSLCKNC TKDADYLNVR GNKGFCGTCM RTIMLIENIA SENKEMVQVD  180
FDDKTSWEYL FKVYWVLLKK KLALSLDELT NAKNPWKETA IMGPKGNSSS ELNNYGNAKG  240
TNMEKSCGDQ GDSYSKRRKT TRQQKLLNNF EYLGAENSGV RKGVPFPGGT NWATTELLEF  300
VAHMKNGDVS VLSHFDVQAL LLEYITRNNL RDPRQKSHII CDSRLMKLFG KERVGHFEML  360
KLLESHFLIQ DHSRAIDTVR GEPIEAAAIQ LAVDGNSDSQ PIIACDKRRK TRKKVNEKGQ  420
RANPDEYAAV DVHNMNLIYL KRNWIENLID DAEKIDGKVV GSFVRIKIPG NDQKQDFYRL  480
VQVVGTSKAE PYKIGERTTD IMLEILNLDK KEAVSINGIS NQEFTEDECQ RLYQRIRCGL  540
TKWFTVGEIL EKAMALQAVR VNDWLQSEIL RVTNLRDRAS EKGHMKEYPI ECIEKLQLLN  600
SPDERQRRLQ EIPDIHCDPD MNQYCKYLKV AVELEEKKEN NKPRDSGFTM KEKEPAFPLK  660
GSDDLNDIGS RGTSLGPHST GMELTVNNIE TDKIWHYQDP NGKVQGPFHI EMLRRWSMSG  720
HFPPDLRIWR ANEKQDNSIL LTDALDGWYG EAKQPFCNSF VPTEDIRVAS DDGCLSGAVD  780
GSGGTDLNVA QIESKQVEGT LNSTLNNTSS HYCGNNESVK STELSSQSSP CTATCTPVVD  840
VVNSGAVQKG SPLPTCDLVK GDNDLPGLPQ VSSSVPSSTL SDKPCGTQSQ QFNNDHGVER  900
WDNGSINMGE NMDKTSEGQN IAGSAKLDDS EGKSGRSSGQ SWRSSPLNDA SNGWDSNSGL  960
ISLARALEAS EHSQDIDFSD IPTSTSKLNL EDSKGQANES KLSLSLNVPH RDSGPSWSTT  1020
SSLVGNSQIA EIVGEWGGHS STPAKPSAKE WDSNIVPGSS FKPSIMGSDH AAAPTSGSDQ  1080
LTHSSPPDPA NNAFAWDPIV PEPNEGDESV SDLLAEVEAM ESLNGLTSPT SIMHCDGELA  1140
QGSEPDCFSP VGRLSPAPDP GKSDAFSSTN DLQMPSQSTV TTEPFKISQS EVLDAQKSSG  1200
RHSSTSAEIN ENTRPRDVSV NQYKVGSNMQ PPASPVTTWG MDTIDTAWRS GPETTSTNCG  1260
PVHGNKNFSW RGLGEGNTNV SRGTGQGTFQ ENSSINAGTS GENLAYWGSQ QRYVSPRHRD  1320
FQGRDSSSAG GSDFHGRDSS SARGSDFQGK DSSSARGSDF QGRDSSSVRG SDFLGRDSSF  1380
ARGRSSSNRH SSYYGGSNGG GTFRSPPKGQ RICKFYESGY CKKGAACRYW HP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gnd_C2e-16691441587Histone-lysine N-methyltransferase NSD3
4gne_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gnf_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gng_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gng_D2e-16691441587Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.1911e-128boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO841732501e-128
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016696937.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2
TrEMBLA0A1U8K3940.0A0A1U8K394_GOSHI; zinc finger CCCH domain-containing protein 44-like isoform X2
STRINGGorai.007G197200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding