PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1584
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 522aa    MW: 56418.6 Da    PI: 4.8137
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1584genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30253311259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Gh_D11G1584 253 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 311
                  7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-34237313IPR003657WRKY domain
SuperFamilySSF1182907.19E-28245313IPR003657WRKY domain
PROSITE profilePS5081129.838247313IPR003657WRKY domain
SMARTSM007741.0E-36252312IPR003657WRKY domain
PfamPF031069.6E-27254311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDFFAQRSNK LVDDIDDEEV EEEEEEEEDD NDDDDDGNLI HTSDSDIKDS AGRTKLQLNV  60
NTGLNLLTTN TSSDISNDGI HCNTEDKRAK DEVAVLQAEV ERMNTENQRL REMLSQVTSN  120
YNTVQMHLVT LMQQPPDAKA EEQDLMKQIK KSNGGLMVLS PRQLMDLRLP AVDIDEPSLS  180
SSDHSGSEIA SKGFGLRKRD SSEDSLDQGS QAQGWVANKV PRFNSSKNVD QTEATMRKAR  240
VSVRARSEAT MITDGCQWRK YGQKMAKGNP CPRAYYRCTM AAGCPVRKQV QRCAEDRTIL  300
ITTYEGNHNH PLPPAAMAMA STTSSAARML LSGSMSSADG LMNSNFLTRT ILPCSSSMAT  360
ISASAPFPTV TLDLTQTPNP LQFPRLTPGQ FQVPFPNPPQ NLANSPAAAL LPQIFGQALH  420
TQSKFSGLQM SGDVGHQQLQ ISLAETVNAA TAAIAADHNF TAALAAAITS IIGSSQPNNA  480
AVPNDNAATA NLTSVTNSSA NNATTTSNSN NKITKNSSFT AN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-23239315176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694653.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-126WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1U8K1060.0A0A1U8K106_GOSHI; probable WRKY transcription factor 31
STRINGGorai.007G171900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-97WRKY family protein