PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G1536 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 404aa MW: 44261.3 Da PI: 8.4615 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.4 | 2e-30 | 93 | 150 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK vkg+ef rsYY+Ct+++C++kk++ers+ d+k+++++Y g+H+h+k Gh_D11G1536 93 QDGYNWRKYGQKLVKGNEFVRSYYKCTHPNCRAKKQLERSH-DGKMIDTVYVGQHDHPK 150 7****************************************.***************85 PP | |||||||
2 | WRKY | 106.7 | 1.1e-33 | 265 | 323 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++d k+v++tYeg+H+h+ Gh_D11G1536 265 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDAKLVITTYEGQHDHD 323 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.548 | 87 | 151 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-26 | 89 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-24 | 91 | 151 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-32 | 92 | 150 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.3E-24 | 93 | 149 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-35 | 251 | 325 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-29 | 258 | 325 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.036 | 260 | 325 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-39 | 265 | 324 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-26 | 266 | 322 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MVPSGKCVTD EVGKDKLRSP DAGSHALQHN TDGKIPSSQS DQGGETPLIK SEKDPLSQSE 60 KLGNASSVIT KQTPSLLPGM EGSSPVARER ASQDGYNWRK YGQKLVKGNE FVRSYYKCTH 120 PNCRAKKQLE RSHDGKMIDT VYVGQHDHPK PLNLPLAVGF AVSVVEERPD KSLQIVVKDK 180 SLHSQMPHQI EPRSGSQPLS SAVSEDVKGA ASKSNRIQNV ADSDDDHLVS KRRKKENSNA 240 DASPVEKPTN DSRMVIKTFS EVDIVNDGYR WRKYGQKLVK GNPNPRSYYR CSSPGCPVKK 300 HVERASHDAK LVITTYEGQH DHDLPPTRSV THNTTGVTVH SAAHSDESRT KVEESETVCL 360 DMVVYSGSVA ENKSSEQLNG ELRTKSDFSG TVCVSLIDAP ISGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-38 | 94 | 326 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21850 | 8e-76 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669766 | 0.0 | KF669766.1 Gossypium hirsutum WRKY transcription factor 46 (WRKY46) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016696352.1 | 0.0 | PREDICTED: WRKY transcription factor 1-like | ||||
Swissprot | Q9SI37 | 9e-98 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | A0A1U8K1I6 | 0.0 | A0A1U8K1I6_GOSHI; WRKY transcription factor 1-like | ||||
STRING | Gorai.007G167100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7949 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 1e-101 | zinc-dependent activator protein-1 |
Publications ? help Back to Top | |||
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