PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G1499

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1139aa MW: 128548 Da PI: 7.7637

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G1499	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.1	2.3e-11	5	54	8	56
-HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ql eLe ++ n+yp+++e+e A++lgLt +qV+ WF +R ++k Gh_D11G1499 5 SQFQLIELEYIYKAdNKYPTQKEIEGYAASLGLTLKQVQQWFASKRKRDK 54 789********99*****************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.8E-4	1	60	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.795	1	56	IPR001356	Homeobox domain
CDD	cd00086	2.63E-10	3	54	No hit	No description
SuperFamily	SSF46689	2.65E-10	3	56	IPR009057	Homeodomain-like
Pfam	PF00046	1.2E-8	5	54	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-9	6	54	IPR009057	Homeodomain-like
SMART	SM00571	2.0E-8	361	420	IPR018501	DDT domain
PROSITE profile	PS50827	12.185	361	420	IPR018501	DDT domain
Pfam	PF02791	1.0E-9	362	417	IPR018501	DDT domain
Pfam	PF15612	1.6E-9	637	677	IPR028942	WHIM1 domain
Pfam	PF15613	2.3E-12	770	843	IPR028941	WHIM2 domain
Gene3D	G3DSA:3.90.10.10	5.8E-4	930	994	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1139 aa Download sequence Send to blast
MKRKSQFQLI ELEYIYKADN KYPTQKEIEG YAASLGLTLK QVQQWFASKR KRDKGTILPI 60 HSMTSLSAST KRNAAAISVA RKNQKSASSV GANGFGKKKK KMLLPQDFLS PQYILSKVFR 120 KDGPPLGVEF DSLPSQTFHC KGSKESHPAD EECQRAAAKK RKVFELTSID HQNNSNESAS 180 VKKHGMGKGL MTVWRVVNPE GGDIPTGIDI SNRQIVAPSQ TSPVVRRQPP QNKRRQPLVS 240 QMKQRSLEKK LQEKKRASIK RREVQSNKND NQRQPRNEKC ELALDGTISN ERLDQLAMLV 300 DDEELELREL QAGPNPLTCA DHLGTSGLLG CSLCKDLLAK FPPDSVKMKQ PFSMQPWDSS 360 PETVKKLFKV FHFLYTYSVT LDTCSFTLDE FAQAFHDKDS LLLGKIHVAL LKLLLSDVEV 420 ELSGAVLPHF SLSCKFLALL HSVENQEFVV EVWKTSLNPL TWTEILRQVL VAAGFGSKQG 480 LLRREALNKE MSLMVRFGLR PGSLKSELFK ILSERGNNGL KVSDLALSLP VTELNLTSTT 540 EELEELICST LSSDITLFEK ISPSAYRLRC SSVAKDSNNC HSDTEDSGSV DDDSDDSSDD 600 SDHDPGNYYQ RKFKHNNHHK GRNNMLTVHT EIDESHPGEV WLLGLMEGEY SDLSIEEKLN 660 ALVALIDLLS DGSSIRMENP GKAIVEYVPS IPHYGSGAKI KRSSSNRQNF PRPSWVYGGQ 720 RNGVQVSHTS SDSRPVDSSA ITKSFEKERC SSSGQDAKQT EVGVYIHPMQ SIFLGSDRRY 780 NRYWLFLGPC NAYDPGHRRI YFESSEDGHW EVIDTEEALR ALLAVLDDRG KREALLIESL 840 EKRGTSLRQE MSSRHLHDAE IRHTPSYSPE MDAVREDSCS PVSDVDNLSL TVAMNASLTS 900 CGAIVLHAGK KGAEQNRMWR RLQEFDVWIW DCFYLNLNAV KHNKRSYLDS LTRCESCHDL 960 YWRDEKHCRI CHTTFEIDFD LEERYAIHVA TCREKGDNST FPKFKVLPSQ LQSLKAAVHA 1020 IESFMPKDAL VGAWTKSAHR LWVKRLRRTS SLSELLQVVI ADFVAAINEN WLNQCHIEQG 1080 GCTVIEEIIA FFPTMPQTSS ALALWLVKLD EFIASYLKKI HSEKELENGT RSDRRAAKE

Sequence ? help Back to Top

Protein Sequence Length: 1139 aa Download sequence Send to blast

MKRKSQFQLI ELEYIYKADN KYPTQKEIEG YAASLGLTLK QVQQWFASKR KRDKGTILPI  60
HSMTSLSAST KRNAAAISVA RKNQKSASSV GANGFGKKKK KMLLPQDFLS PQYILSKVFR  120
KDGPPLGVEF DSLPSQTFHC KGSKESHPAD EECQRAAAKK RKVFELTSID HQNNSNESAS  180
VKKHGMGKGL MTVWRVVNPE GGDIPTGIDI SNRQIVAPSQ TSPVVRRQPP QNKRRQPLVS  240
QMKQRSLEKK LQEKKRASIK RREVQSNKND NQRQPRNEKC ELALDGTISN ERLDQLAMLV  300
DDEELELREL QAGPNPLTCA DHLGTSGLLG CSLCKDLLAK FPPDSVKMKQ PFSMQPWDSS  360
PETVKKLFKV FHFLYTYSVT LDTCSFTLDE FAQAFHDKDS LLLGKIHVAL LKLLLSDVEV  420
ELSGAVLPHF SLSCKFLALL HSVENQEFVV EVWKTSLNPL TWTEILRQVL VAAGFGSKQG  480
LLRREALNKE MSLMVRFGLR PGSLKSELFK ILSERGNNGL KVSDLALSLP VTELNLTSTT  540
EELEELICST LSSDITLFEK ISPSAYRLRC SSVAKDSNNC HSDTEDSGSV DDDSDDSSDD  600
SDHDPGNYYQ RKFKHNNHHK GRNNMLTVHT EIDESHPGEV WLLGLMEGEY SDLSIEEKLN  660
ALVALIDLLS DGSSIRMENP GKAIVEYVPS IPHYGSGAKI KRSSSNRQNF PRPSWVYGGQ  720
RNGVQVSHTS SDSRPVDSSA ITKSFEKERC SSSGQDAKQT EVGVYIHPMQ SIFLGSDRRY  780
NRYWLFLGPC NAYDPGHRRI YFESSEDGHW EVIDTEEALR ALLAVLDDRG KREALLIESL  840
EKRGTSLRQE MSSRHLHDAE IRHTPSYSPE MDAVREDSCS PVSDVDNLSL TVAMNASLTS  900
CGAIVLHAGK KGAEQNRMWR RLQEFDVWIW DCFYLNLNAV KHNKRSYLDS LTRCESCHDL  960
YWRDEKHCRI CHTTFEIDFD LEERYAIHVA TCREKGDNST FPKFKVLPSQ LQSLKAAVHA  1020
IESFMPKDAL VGAWTKSAHR LWVKRLRRTS SLSELLQVVI ADFVAAINEN WLNQCHIEQG  1080
GCTVIEEIIA FFPTMPQTSS ALALWLVKLD EFIASYLKKI HSEKELENGT RSDRRAAKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	101	GKKKKKM
2	153	161	QRAAAKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016696181.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3-like isoform X1
Refseq	XP_016696182.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3-like isoform X1
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	A0A1U8K0X1	0.0	A0A1U8K0X1_GOSHI; homeobox-DDT domain protein RLT3-like isoform X1
STRING	Gorai.007G162700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9638	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator