PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1449
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 538aa    MW: 58664.6 Da    PI: 8.2122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1449genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09350397455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Gh_D11G1449 350 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 397
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-17344415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-10344401No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16346414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-6350397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10352402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MENQFFVNAG IPSPAPPLHF GSSMPMSDWQ SLSSAMEIQS QDRFPTPNWE KPTDYGLQFE  60
SALSSMVSSR AASNCNVSSE SLIIRELIGK LGSIGNGGEI PPHSQPLLAS YINGNNSSNT  120
SCYSTPLNSP PKLNLPMVDS LVKEKLPPKG LNSSVADFSA DPGFAERAAK FSCFGSRSFN  180
GRTTQFGPKD NTEFAAFRSN PLAANAKLPR VSSSPSIKAM VSQGTTTNKN TPLQDRSELA  240
NSLEESIVSE QNPNGEPGLK ASNSRKRKAV PKAKTKETSS SPSANASKVT EPNEASNEKR  300
CKLSDSNGNE NGSAKAEEDA KGDKANNTKA LEPPKDYIHV RARRGQATDS HSLAERVRRE  360
KISERMKLLQ NLVPGCNKVT GKALMLDEII NYVQSLQRQV EFLSMKLASV NTRLDFNVES  420
LMSKDIFQRN NTLQQPIFAI NSSASTFFGH QPQQNPALHS NMSNGTMTQC SVDPLDTAIC  480
PKLNTHLPQI NQFVETVPPQ YPTFCEGDLE TIVHMGFGQN QSQDMALHSQ NFQGKSWN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.226220.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490903.10.0PREDICTED: transcription factor bHLH62 isoform X2
TrEMBLA0A0D2SKX50.0A0A0D2SKX5_GOSRA; Uncharacterized protein
STRINGGorai.007G157700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-129bHLH family protein