PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1395
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 549aa    MW: 60047.4 Da    PI: 6.962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1395genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.6e-15358404455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P +      K +Ka++L  A++Y+ksLq
  Gh_D11G1395 358 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDDAIDYLKSLQ 404
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-20352420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.987354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.76E-16357408No hitNo description
Gene3DG3DSA:4.10.280.104.3E-21358412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-13358404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-17360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MNHSVPDFEM EDDYAIFLSP SSLTRVEKPP SRPEDEIMEL LWQNGQVVMQ SQNQRSMKKL  60
PSFKLLDADH SAPREIRSSS PSHKHRRHHH QEQQQLVTDH LFMQEDEMAS WLHYPISDAN  120
FDHDFCTDLL YPPSSSPTAA VAPCVSSIVA TSTPPILKRV SQVSVSASAK ESVPRPPVPP  180
ARRNELEPAR IHNFSHFSRH ITARTEQSEL SNSKNVMGES TVVDSSNTPA AAPESRAAQA  240
MPSNTEAASG GNNNNNNNAN ANMSAAGVPY LQSADVRLGA NKDSLATCEV TVTSSPGGSS  300
ASAEPTAQKA ASAEDRKRKG RELDEAECHS ENAEFESADT KKQTRGSTSA KRSRAAEVHN  360
LSERRRRDRI NEKMRALQEL IPRCNKSDKA SMLDDAIDYL KSLQMQVQMM SMGCGMVPMF  420
PGVQQYISPM GIGMSMGMDM GIIRPMMSFP NVVAGSALPT SAAAAHLGPR IPMPAFHMPP  480
SVPAPDPSRF QPSNQSDPIP NPLVMQNLNQ AQQYIGLHQT MQIPHPQGQA MAQPSSRRGA  540
EKVENHPTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362367ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6161970.0JX616197.1 Gossypium hirsutum clone NBRI_GE60666 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710685.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLA0A1U8L7V50.0A0A1U8L7V5_GOSHI; transcription factor PIF1-like isoform X1
STRINGGorai.007G151900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.39e-55phytochrome interacting factor 3-like 5