PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G1304 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 446aa MW: 49662.1 Da PI: 9.3361 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.6e-05 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Gh_D11G1304 101 FICEICNKGFQRDQNLQLHRRGH 123 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00049 | 177 | 199 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Gh_D11G1304 177 WKCEKCSKIYAVQSDWKAHSKTC 199 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 100 | 123 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.24E-6 | 100 | 123 | No hit | No description |
Pfam | PF12171 | 5.2E-5 | 101 | 123 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.022 | 101 | 123 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 101 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 260 | 142 | 172 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 165 | 198 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.24E-6 | 172 | 197 | No hit | No description |
SMART | SM00355 | 170 | 177 | 197 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MFPAATMSNS TSLSEEANVS SGTRVQDFGG LNPVVTHQQL PQKMKKKRSL PGNPGTTFVL 60 SLPVFLFRLH VLVFNIFYSI TDPDAEVIAL SPKTLLATNR FICEICNKGF QRDQNLQLHR 120 RGHNLPWKLK QRNSKEVKKK AYVCPEPTCV HHHPSRALGD LTGIKKHYCR KHGEKKWKCE 180 KCSKIYAVQS DWKAHSKTCG TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLSANQL 240 AAAANPALNP SSLFPYQNPW DPIQTSNPNP NDPLQVKPES HHFTPYFQEP PLPPPKALFT 300 SPFQSLHVSN NPPSNAAATS ATPQLSATAL LQKATTVGAT ATQIKNNNYY YSMATHLSPD 360 FSGFTAADLA TWQKNSDRFT RDFLGLTRDH QGGNGNVNLS MNPRDVLSYT GGVELQHFER 420 GQPLLRPQGF GFPEPYAATS ETWGDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-36 | 173 | 237 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 1e-36 | 173 | 237 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9393 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM461724 | 1e-131 | AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016710873.1 | 0.0 | PREDICTED: protein indeterminate-domain 12-like | ||||
Swissprot | O22759 | 1e-124 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | A0A1U8LBY9 | 0.0 | A0A1U8LBY9_GOSHI; protein indeterminate-domain 12-like | ||||
STRING | Gorai.007G139800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-120 | indeterminate(ID)-domain 12 |
Publications ? help Back to Top | |||
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