PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G1303

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 345aa MW: 39850.5 Da PI: 5.0941

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G1303	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.5	1.4e-35	44	136	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d++++ ++sws+ g+sf+v+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k+++++ weF+++ F +g+++ll++i+ Gh_D11G1303 44 FLTKTFDMVDDPSTNYIVSWSSGGSSFIVWDPHSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDSDR---------WEFANEGFVRGQRDLLKSIR 131 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Gh_D11G1303 132 RRKTT 136 976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.22E-34	39	133	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.2E-60	40	133	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.7E-38	40	133	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.9E-32	44	133	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.0E-20	44	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.0E-20	82	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	83	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.0E-20	95	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MNPYFPVKEE YPSSSYSQSD DDAPRMMEPP QPVEGLHDSG PPPFLTKTFD MVDDPSTNYI 60 VSWSSGGSSF IVWDPHSFST NLLPRYFKHN NFSSFVRQLN TYGFRKIDSD RWEFANEGFV 120 RGQRDLLKSI RRRKTTTSQL PTSQQALGPC VEVGRFGLDG EVDCLRRDNQ VLMMELVTLR 180 QQQLSTRAHI QAIEERLQCT EKKQQQMMSF LARAMQNPSF LQQLMQQKER TKDLEEAMSR 240 KRMRPIDQRP LAVDVGESSR GSDGTNPVKT KTLEFGDYGY QVTELEALAL EMQGYGRTRR 300 GQEESQNGHE HRESHDKELD EGFWEELLNE KFLELDIPGT ELARD

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MNPYFPVKEE YPSSSYSQSD DDAPRMMEPP QPVEGLHDSG PPPFLTKTFD MVDDPSTNYI  60
VSWSSGGSSF IVWDPHSFST NLLPRYFKHN NFSSFVRQLN TYGFRKIDSD RWEFANEGFV  120
RGQRDLLKSI RRRKTTTSQL PTSQQALGPC VEVGRFGLDG EVDCLRRDNQ VLMMELVTLR  180
QQQLSTRAHI QAIEERLQCT EKKQQQMMSF LARAMQNPSF LQQLMQQKER TKDLEEAMSR  240
KRMRPIDQRP LAVDVGESSR GSDGTNPVKT KTLEFGDYGY QVTELEALAL EMQGYGRTRR  300
GQEESQNGHE HRESHDKELD EGFWEELLNE KFLELDIPGT ELARD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-26	39	138	15	125	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR067404	0.0	KR067404.1 Gossypium hirsutum HSF23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314139.1	0.0	heat stress transcription factor A-6b-like
Refseq	XP_016708386.1	0.0	PREDICTED: heat stress transcription factor A-6b-like isoform X1
Swissprot	Q9LUH8	1e-120	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A0M5JWA3	0.0	A0A0M5JWA3_GOSHI; HSF23
STRING	Gorai.007G139600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1256	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-122	heat shock transcription factor A6B

Publications ? help Back to Top
Wang J,Sun N,Deng T,Zhang L,Zuo K Genome-wide cloning, identification, classification and functional analysis of cotton heat shock transcription factors in cotton (Gossypium hirsutum). BMC Genomics, 2014. 15: p. 961 [PMID:25378022]