PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D11G1266 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 39003.5 Da PI: 4.9425 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.9 | 5.5e-06 | 220 | 246 | 5 | 31 |
HHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 5 hnerErrRRdriNsafeeLrellPkas 31 + +++r+RR ri +++ L+ellP++s Gh_D11G1266 220 AAAIDRQRRLRIDESIKALQELLPSSS 246 5799*********************83 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.563 | 215 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-9 | 217 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.59E-9 | 217 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.87E-5 | 217 | 269 | No hit | No description |
SMART | SM00353 | 0.0058 | 221 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MDGQPGHENP LMSLNSGGSV NEFPYDYVDD TNPVLLTPTG RNRNQPSLQS LSQWIDCPKT 60 PHSYVEFLTE NLEKVPTADV LESIGSPIGG IHTVDGVSEI QRELLHSNEG KAFSSGPDGY 120 SLESEQWNLK LSAYPTEINN HEASASERFL RQHDRIPMSR ISSSEYEFHA QLCVFQQNHA 180 SWMQKPKAED GNVYHLQSKE TISAPSFQSQ PLYHAPKSRA AAIDRQRRLR IDESIKALQE 240 LLPSSSERGL GNALDDIIDY VKFLQLQVKE LSRSRLGGEP TSNPFVFFEG YGHYVLHEQM 300 INEPLEEMMA KLLEINPSAA TQLLESRGLY MMPRALVDDF CTESHR |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX589202 | 5e-88 | JX589202.1 Gossypium hirsutum clone NBRI_GE23854 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016696091.1 | 0.0 | PREDICTED: transcription factor bHLH69-like | ||||
Refseq | XP_016696092.1 | 0.0 | PREDICTED: transcription factor bHLH69-like | ||||
TrEMBL | A0A0D2SJI7 | 0.0 | A0A0D2SJI7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G135600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12956 | 16 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G30980.1 | 6e-21 | LJRHL1-like 2 |