PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1233
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 667aa    MW: 75614.4 Da    PI: 6.6434
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1233genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.8e-22145247199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f k+ltpsd++++g +++pk+++++       +++++ +++l+  d+++ +W++++iyr++++r++lt+GW+ F  +++L +gD ++F   + +++el
  Gh_D11G1233 145 FSKKLTPSDTSTHGGFSIPKRHVDDGclppldMSQQTPQQELVAIDLHSFEWRFRHIYRGQPKRHLLTSGWSTFLTSKKLLAGDEFIFL--RGEKGEL 240
                  88*********************888*****9555555679************************************************..449999* PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Gh_D11G1233 241 RLGIRRA 247
                  ****996 PP
2Auxin_resp101.88.8e-34272354183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a ha+st+s+F+v Y+P++ +seF++++++++k+ ++ +++G+Rf+m++e+e+++e+r sGt+++++d+d +rWpnS+Wr+Lk
  Gh_D11G1233 272 AFHAFSTRSMFNVNYRPWSISSEFIISFDRYMKSAQIDYCIGTRFRMRLEGEECAEQRPSGTIISIEDVDHTRWPNSEWRCLK 354
                  679******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-32137272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-32143250IPR015300DNA-binding pseudobarrel domain
CDDcd100172.65E-17144246No hitNo description
PfamPF023621.2E-18145247IPR003340B3 DNA binding domain
SMARTSM010197.1E-17145248IPR003340B3 DNA binding domain
PROSITE profilePS5086311.885145248IPR003340B3 DNA binding domain
PfamPF065076.3E-30272354IPR010525Auxin response factor
SuperFamilySSF542777.19E-7565643No hitNo description
PROSITE profilePS5174518.27565648IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MDGERNGLKA KVPFHPRRRI NVYGLPLLPP NNQGEKDDLH VELWHACAGP SVYVPRAGEK  60
VLYFPQGHIE QLDACMNQDG IMEMPIYNLP SKILCRVMHV QLKVEPGTDE VFAQITLIPE  120
AEQDEESLEH RNYQPLPQKA YPVFFSKKLT PSDTSTHGGF SIPKRHVDDG CLPPLDMSQQ  180
TPQQELVAID LHSFEWRFRH IYRGQPKRHL LTSGWSTFLT SKKLLAGDEF IFLRGEKGEL  240
RLGIRRAATV LKYTSTSIIS GHSMRHGILA SAFHAFSTRS MFNVNYRPWS ISSEFIISFD  300
RYMKSAQIDY CIGTRFRMRL EGEECAEQRP SGTIISIEDV DHTRWPNSEW RCLKVKWYPT  360
AGENFHPERV CPWNIEPTEF RIKKRPSILH NQKKARTDDV SSPGFPTLLM DGMWSGSIKY  420
ESQSSSGVLQ GQEDSDTDGN QPDALRKPLP HCLPLNHSWD SMQQPIQNQR EIGAAPFSGG  480
QEGSISEPRN ENETSWCEPN EGHACMLFGV NLVNGPLEPP SPQLVTSSEL ESHCSIPPTS  540
QSTVSKPSKG TSSKQCENCC SASNWSCTKV LKHGTALGRS VDITRFGGYK DLISELDRMF  600
DFNGRLIDGS SGWHVTFTDD EGEMRMIGDH YPWQKFQNEV RRMLINPKEE IGRVNQSSLM  660
APYDEVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1293737717354Auxin response factor 1
4ldw_A1e-1293737717354Auxin response factor 1
4ldw_B1e-1293737717354Auxin response factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016696028.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 23-like
TrEMBLA0A1U8K4Y40.0A0A1U8K4Y4_GOSHI; Auxin response factor
STRINGGorai.007G131900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157971016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.21e-156auxin response factor 1