PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1099
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 455aa    MW: 48711 Da    PI: 7.9065
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1099genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.31.3e-072612821535
                  -TT-SS-EEEEEE-ST.T---E CS
         WRKY  15 vkgsefprsYYrCtsa.gCpvk 35 
                   kg+++pr+YYrCt+a gCpv 
  Gh_D11G1099 261 AKGNPCPRAYYRCTMAvGCPVP 282
                  69**************9**986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508119.638252298IPR003657WRKY domain
SuperFamilySSF1182904.32E-5261284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.7E-5261282IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MIKPRILNHP PKDSGEPDGA LDDSGDHVKP LIKEMDFFPN HNQSHDRHQG RKIDNNNNPL  60
SSLLDSEVNI GLNLLSSSSG VSRIANEEKP KAEISHAKIA LERLHEENRR LRCTLGQITK  120
SYKELQGQLF MAVQKLALGN QIEKKDAVNG TSSPIMSVPQ FMDPRPSAAL DVNEPSASDD  180
RTQDLSASPG KNMEVVSKEG EHQIPGKHAS VEDGSDQTSQ SWRPTKCPKL DHSNKEEQVS  240
EVPFRKARVS IRARSEAPLM AKGNPCPRAY YRCTMAVGCP VPTALANTTS AAAAMLLSGS  300
TTSKDGLSLP SFSYFPSLPY ASTMAPSAAP FPIVTLDLTQ GPNTVPFLRP PPSAATFPLP  360
VHGYPQILGH SMLAPPKLSA VSAMQLWQRP VSMVETVTAA IASDPNFTTA LAAAISTIIE  420
AAKSNNGGNN NSSKGVATLP GSTQLPQSCT TFSAN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698250.0KF669825.1 Gossypium hirsutum WRKY transcription factor 51 (WRKY51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490253.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA0A0D2TDI70.0A0A0D2TDI7_GOSRA; Uncharacterized protein
STRINGGorai.007G117200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-21WRKY family protein