PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G1068

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 965aa MW: 106837 Da PI: 8.3086

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G1068	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	6.1e-16	260	304	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Gh_D11G1068 260 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 304 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.51E-6	54	105	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.5E-9	54	105	IPR009072	Histone-fold
SuperFamily	SSF46689	8.22E-17	254	310	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.091	255	309	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.1E-16	258	307	IPR006447	Myb domain, plants
SMART	SM00717	7.3E-13	259	307	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-8	260	300	IPR009057	Homeodomain-like
Pfam	PF00249	4.2E-13	260	303	IPR001005	SANT/Myb domain
CDD	cd00167	2.03E-9	262	305	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MVKDNCVAIK VENSPMLKSI TTPLLKKSLQ IYPTLNCSDV QKKYESDLFL KVTAKKIGGL 60 ATPTPGKSKR PHRFRAGTRS LQEIRKYQKT SNLLVPTASF IREIEPIPSG NLPPGFDPIE 120 GCKLIRKENV LFSRFSLFFF SLYEAVRVHY NEYFIWSFNS LPLEGHVPVA HATLAQCHPL 180 FHTWWYGCNR GKLAGGEVTR RKRVPRGISG GAFTDLTSQN GNLWLRFEVN ELSSSMAISQ 240 GFGVYGFVLT RKPYTITKQR ERWTEEEHNR FLEALKLYGR AWQRIEEHIG TKTAVQIRSH 300 AQKFFSKLEK EALTKGIPTG QALDIEIPPP RPKRKPRNPY PRKMSAATSV QMGAKDGKSE 360 TPVSSLHCKQ AFNLEKEPLP ERSSRDEKSS NLKEILDDNC SEVFTLLHEA NCSSISSVNK 420 NFIPTSTVLR NSCPLREFVP SVKETINKDT SKPSNLENSC TSYEKPAQVQ RKDDMDGAIC 480 TDEMQATHNN PQHVAVHVLD GSPGTCAPNP SMDITFQDSI FHPMGDIHGQ VNLFANPAAS 540 ATTAHQNNAP RSTHQAFPTF HTPFMHLHPN QEDYRSFLHV SSTFSSLVVS TLLQNPAAHA 600 AASFAATFWP YANVQNSDDS PACDQEGFPS RQMNSATGMA AIAAATAWWA AHGLLSVCAP 660 LQTGCTCAPA STATVTPMEN GEAPAAKMER KMYAGQDPSM QDQRLDPQYA EAMQCQRSAS 720 KSPTSSSDRE ESGEAKANTE VKATAVTEPQ EPNKTKNGKQ VDRSSCGSNT PSSSDVEIDV 780 LENNKEDKEQ KEDSKAADAN HPQVECSNRR GRSSTNLSDS WKEVSEGGRL AFQALFSREV 840 LPQSFSPPHD RKNKEKQKGS VGADEQNPDQ NNGETSILHF SSEACQSCSD HQGVEKKVLS 900 KAKNIVDESL LTIGLGHEKL KARQTGFKPY KRCSVEAKES RVMNTGSQGE EKDPKRIRLE 960 GEALT

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MVKDNCVAIK VENSPMLKSI TTPLLKKSLQ IYPTLNCSDV QKKYESDLFL KVTAKKIGGL  60
ATPTPGKSKR PHRFRAGTRS LQEIRKYQKT SNLLVPTASF IREIEPIPSG NLPPGFDPIE  120
GCKLIRKENV LFSRFSLFFF SLYEAVRVHY NEYFIWSFNS LPLEGHVPVA HATLAQCHPL  180
FHTWWYGCNR GKLAGGEVTR RKRVPRGISG GAFTDLTSQN GNLWLRFEVN ELSSSMAISQ  240
GFGVYGFVLT RKPYTITKQR ERWTEEEHNR FLEALKLYGR AWQRIEEHIG TKTAVQIRSH  300
AQKFFSKLEK EALTKGIPTG QALDIEIPPP RPKRKPRNPY PRKMSAATSV QMGAKDGKSE  360
TPVSSLHCKQ AFNLEKEPLP ERSSRDEKSS NLKEILDDNC SEVFTLLHEA NCSSISSVNK  420
NFIPTSTVLR NSCPLREFVP SVKETINKDT SKPSNLENSC TSYEKPAQVQ RKDDMDGAIC  480
TDEMQATHNN PQHVAVHVLD GSPGTCAPNP SMDITFQDSI FHPMGDIHGQ VNLFANPAAS  540
ATTAHQNNAP RSTHQAFPTF HTPFMHLHPN QEDYRSFLHV SSTFSSLVVS TLLQNPAAHA  600
AASFAATFWP YANVQNSDDS PACDQEGFPS RQMNSATGMA AIAAATAWWA AHGLLSVCAP  660
LQTGCTCAPA STATVTPMEN GEAPAAKMER KMYAGQDPSM QDQRLDPQYA EAMQCQRSAS  720
KSPTSSSDRE ESGEAKANTE VKATAVTEPQ EPNKTKNGKQ VDRSSCGSNT PSSSDVEIDV  780
LENNKEDKEQ KEDSKAADAN HPQVECSNRR GRSSTNLSDS WKEVSEGGRL AFQALFSREV  840
LPQSFSPPHD RKNKEKQKGS VGADEQNPDQ NNGETSILHF SSEACQSCSD HQGVEKKVLS  900
KAKNIVDESL LTIGLGHEKL KARQTGFKPY KRCSVEAKES RVMNTGSQGE EKDPKRIRLE  960
GEALT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	330	336	RPKRKPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00654	PBM	Transfer from LOC_Os08g06110	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX587641	6e-90	JX587641.1 Gossypium hirsutum clone NBRI_GE21811 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016695852.1	0.0	PREDICTED: protein LHY-like isoform X1
TrEMBL	A0A1U8K014	0.0	A0A1U8K014_GOSHI; protein LHY-like isoform X1
STRING	Gorai.007G113900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5576	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	1e-107	MYB_related family protein