PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1063
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 385aa    MW: 43732.5 Da    PI: 6.0709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1063genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75.1e-14199250155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gh_D11G1063 199 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 250
                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.82E-12197254No hitNo description
PROSITE profilePS5088816.126198249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-17198265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-11199250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-15199262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11204255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MERLQGPINP YFLGEHLEVE CLEQGFISCE RLKLGEEEEE AHFSIPSFEE KMPFLQMLQS  60
VESPQLFAFK EPNFQTLLRL QHMKKPWELN TNPFIPEMET QVQALELESC VTHETVLDLH  120
SPVKPETKEL KKSPPSSSCA EVLSSGSNQH QPKSDNCSGE PNLGSSPQKI FTKSPPITRE  180
RRKRKRTKAA KNKEEVESQR MTHIAVERNR RRQMNDYLNS LRSLMPPCYI QRGDQASIIA  240
GAIDFVKELE QLLQSLEAQK RTRKVEESNN SMSNPAMEIH QQEYENGSED GHCGEEVKAE  300
SKTGAAEVEV NVIHNHVNLK IQCSRRAGQL IQAIVTLETL RLTVLHLNIT TSRASVLYSF  360
NLKMEDDSAL RSADEIAAAV HQIFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185RRKRKR
2199210RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695862.10.0PREDICTED: transcription factor bHLH67-like isoform X1
TrEMBLA0A1U8K0220.0A0A1U8K022_GOSHI; transcription factor bHLH67-like isoform X1
STRINGGorai.007G113200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.12e-65bHLH family protein