PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1011
Common NameWRKY50
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 334aa    MW: 37477.9 Da    PI: 5.5822
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1011genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.2e-28111172159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDg++WrKYGqK + gs+fpr+YYrCt++   gC + k+v++s++dp+++e++Y+g+H+++
  Gh_D11G1011 111 VDDGFCWRKYGQKAILGSNFPRGYYRCTHRhsqGCLAIKQVQKSNDDPTIFEVKYKGRHTCN 172
                  59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26108173IPR003657WRKY domain
SuperFamilySSF1182901.12E-24109173IPR003657WRKY domain
SMARTSM007741.7E-38111173IPR003657WRKY domain
PfamPF031069.5E-25112171IPR003657WRKY domain
PROSITE profilePS5081121.953112174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEQEALLNEL KEGREVTNLL MKHLHLHLPS SHQTGLVLIE KILGSYENAL SILNCNGLVV  60
ETKPSLSTME SLPSIDHSSP DKRDVFKKRK TSSGWTEQLR VRSGTPLDNP VDDGFCWRKY  120
GQKAILGSNF PRGYYRCTHR HSQGCLAIKQ VQKSNDDPTI FEVKYKGRHT CNQTSHFAAT  180
YVSVSTESEN EGNYSPKRQH QLEVKQKQAQ QAFSSFGSGI KVKTEDLDNR EDIFPSFPFP  240
VESEQVKNGS FVEALMENDI MGNLSPAFIS PATSESNYFS MSPCHMGSFE SDLTDIISAP  300
TSVTNSPIGD LDISSLDKLE FDPSFPFDNP EFFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-19111171868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.92010.0leaf| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697830.0KF669783.1 Gossypium hirsutum WRKY transcription factor 50 (WRKY50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314140.10.0probable WRKY transcription factor 46
TrEMBLA0A068LD570.0A0A068LD57_GOSHI; WRKY transcription factor 50
STRINGGorai.007G107300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-58WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]