PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0991
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 424aa    MW: 45635.9 Da    PI: 6.5238
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0991genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.18.1e-23305367163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+
  Gh_D11G0991 305 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 367
                  89*******************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.4E-3542135IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.2E-20164285No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-18299364No hitNo description
PfamPF001701.6E-20305367IPR004827Basic-leucine zipper domain
SMARTSM003388.4E-21305369IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.128307370IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.63E-11308361No hitNo description
CDDcd147025.75E-22310359No hitNo description
PROSITE patternPS000360312327IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MLHPLIDEHV QEKEESRVSD FKLTERGEPT SIKGFTFGAL TMGNNEEGKS SKSDKSSSPV  60
PTDQNNIHVY PDWAAMQAYY GPHVNMPPYY SSAVASGHAP PPYMWGPTQP MMPSYGAPYA  120
AIYSHGGVYA HPAVPLASHS LGVPSSPAAA GPVETPTKSP GNTEQGLMKK LKGFDGLAIS  180
IGNGTAENAE GRAKPRPSHS VETAGSADGS DGNTTGTDQS RRKRSREGTP TIAGEDEKIE  240
AKSNQVAAGE VTATISPKLI GTVVSPGMTT GTILELRNTP TMNAMSSAMG VHCGVMPTEV  300
WLQSERELKR ERRKQSNRES ARRSRLRKQA ETEELARKVE SLTSENAALR SEINQLTEMS  360
EKVRLENAIL VEELKNAQLG HAQENILNKK EDKEGEMGEK RSDSGAKLHQ LLDPSPRDDA  420
VAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321327RRSRLRK
2321328RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.73890.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016710467.10.0PREDICTED: G-box-binding factor 3-like isoform X3
SwissprotP427761e-125GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A2P5QKT60.0A0A2P5QKT6_GOSBA; Uncharacterized protein
STRINGGorai.007G105100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-120G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]