PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0977
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 677aa    MW: 76091 Da    PI: 8.5594
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0977genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31598656159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  Gh_D11G0977 598 LDDGYRWRKYGQKAVKNSIHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 656
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18204.7E-4282289IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534741.37E-2488301IPR029058Alpha/Beta hydrolase fold
PRINTSPR007936.1E-8121129IPR002410Peptidase S33
PfamPF005619.4E-13121277IPR000073Alpha/beta hydrolase fold-1
PRINTSPR007936.1E-8151162IPR002410Peptidase S33
PRINTSPR007936.1E-8211225IPR002410Peptidase S33
Gene3DG3DSA:3.40.50.18204.7E-42335336IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18204.7E-42395488IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:2.20.25.801.5E-32584656IPR003657WRKY domain
SuperFamilySSF1182907.32E-28590657IPR003657WRKY domain
PROSITE profilePS5081128.966593658IPR003657WRKY domain
SMARTSM007741.0E-37598657IPR003657WRKY domain
PfamPF031067.0E-25599656IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005773Cellular Componentvacuole
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008233Molecular Functionpeptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MLKNHAPPNL IKPLLSFDLS FLSSISATLS PLQSARLHRF RLRRTSIRAV VAMSIPKFDS  60
TGQSMPEHVA GNWYSVPGLR LRDHRFMVPL DYKNQEASSK ISIFAREIVA VGKEEQPMPY  120
LLYLQGGPGF ECPRPTEASG WILKACEEFR VVLMDQRGTG LSTPLTPSSM QQIKSAQKLA  180
DYLTHFRADS IVNDAEFVRV RLVPEARPWT VLGQSYGGFC GVTYLSFAPQ GLKQVLLTGG  240
IPPIGDGCTA DSVYRACFEQ IIHQNEKYYK RFPQDIEIVQ DIVTFLAESE AGGVPLPSGG  300
ILTPRGLQFL GLSGLGSSAG FERLHYMFER AWDPILVPGA PKQISSYFLN TYENWVSFDT  360
NPLYAILHES IYCQGASSRW SAHRVRADHE SKFDAIKAAK EGRPVLFTGE MIFPWMFDEV  420
KALRPFKEAT QLLAEKEDWP PLYDGTALKN NKVPVAAAVY YEDMYVNFKL VKETASQIAG  480
ISSLTFSQMD GQESNPPPPL LSPLNVPFLF PTSLPSSSLH PPLQTQNILP DIDWVSLLSG  540
HENKLMIESG SNNLMSENGA DHHQDAKGAN MDKRKGSRIK KTSRPRFAFQ TRSEDDILDD  600
GYRWRKYGQK AVKNSIHPRS YYRCTHHTCN VKKQVQRLSK DTSIVVTTYE GIHNHPCEKL  660
METLTPLLRQ MQFLSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23590655974Probable WRKY transcription factor 4
2lex_A2e-23590655974Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698130.0KF669813.1 Gossypium hirsutum WRKY transcription factor 49 (WRKY49) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694816.10.0PREDICTED: proline iminopeptidase-like
TrEMBLA0A1U8JX090.0A0A1U8JX09_GOSHI; proline iminopeptidase-like
STRINGGorai.007G103500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.13e-54WRKY DNA-binding protein 43