PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G0971

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 314aa MW: 34682.3 Da PI: 9.7216

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G0971	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.9	8.6e-12	64	108	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT +E +++++a +++ + Wk+I + +g +t q++s+ qky Gh_D11G0971 64 RESWTDQERDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 108 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-15	58	114	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.195	59	113	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.5E-17	62	111	IPR006447	Myb domain, plants
SMART	SM00717	3.2E-10	63	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-6	63	104	IPR009057	Homeodomain-like
Pfam	PF00249	9.6E-10	64	108	IPR001005	SANT/Myb domain
CDD	cd00167	8.04E-8	66	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MVSVSPNPAP GFYFFDPMNI GLPGLSYLPP ANAVAPPPPP TAGSPYLEDP SKKIRKPYTI 60 TKSRESWTDQ ERDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KAQKNGATEH 120 VPPPRPKRKA AHPYPQKAPK NAAVVPQVVG PFQSSSALLE SGYTYRPDSS SVLENPIAKG 180 AWSSRSYDSV PPVTVSQRTK DDATFAGPNI APNCCYSSSK ESTPRIWSFG ETIAQGDHRK 240 QSRVVPDFSQ VYTFLGSVFD PGASGHLQIL KLMDPINVET VVVLMRNLAT NLKSPEFEDQ 300 RRLLSTYDAE SRGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615111	1e-132	JX615111.1 Gossypium hirsutum clone NBRI_GE58935 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016694824.1	0.0	PREDICTED: protein REVEILLE 5-like
Swissprot	C0SVG5	1e-102	RVE5_ARATH; Protein REVEILLE 5
TrEMBL	A0A1U8K2M4	0.0	A0A1U8K2M4_GOSHI; protein REVEILLE 5-like
STRING	Gorai.007G102900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01280.2	5e-89	MYB_related family protein

Publications ? help Back to Top
Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]