PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G0932

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BES1

Protein Properties

Length: 737aa MW: 83036.2 Da PI: 5.7926

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G0932	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	140.3	1.8e-43	74	212	2	133
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas..aspess 93 g+ r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv DGtt++ +gs+p ++++ ss+s s++ + Gh_D11G0932 74 GAWRSRPLEEKERTKLRERHRRAITARILAGLRKHGNYNLRVRADINDVIAALAREAGWVVLSDGTTFPsrsQGSRPAgDSSAGLTSSSSqmLSQQVP 171 78899*************************************************************988889999975555444444423333333 PP DUF822 94 lq.sslkssalaspvesysaspksssfpspssldsislasa 133 + ++ +ss + ve ++ +k + +p p+ +d s+ ++ Gh_D11G0932 172 PTsLQGVSSGYCASVEYNACHMKGVFMPTPAPYDLSSSGHS 212 3336678999999*****************998876543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.3E-38	77	211	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.95E-181	254	693	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.4E-199	257	709	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	7.3E-103	263	683	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-66	294	308	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-66	315	333	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-66	337	358	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	341	349	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00842	2.3E-8	420	429	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.9E-66	430	452	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-66	503	522	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-66	537	553	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-66	554	565	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.9E-66	572	595	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.3E-8	575	585	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.9E-66	612	634	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.3E-8	663	677	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	2.3E-8	678	692	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MSADMQKLIG ANEEDDEEEI EMDVKEEDNE DHENGQKHIA AQMMLGADGV MPSTSHQFQI 60 QQQLQEQVST PGGGAWRSRP LEEKERTKLR ERHRRAITAR ILAGLRKHGN YNLRVRADIN 120 DVIAALAREA GWVVLSDGTT FPSRSQGSRP AGDSSAGLTS SSSQMLSQQV PPTSLQGVSS 180 GYCASVEYNA CHMKGVFMPT PAPYDLSSSG HSQSSGMVGN GGEQTESLPL IAGSMEVINE 240 QIIGLPPKLP ERDFAGTPYV PVYVMLPLGV VNMKCELVDP DGLLKQLRVL KSINVDGVMI 300 DCWWGIVEAD APQEYNWNGY RRLFKMVHEL KLKLQVVMSF HECGGNVGDD VCIPLPHWVA 360 EIGRSNPDIF FTDREGRRNT ECLSWGIDKE RVLRGRTAVE VYFDFMRSFR VEFNEFFEDG 420 IISMVEVGLG PCGELRYPSC PVKHGWRYPG IGEFQCYDQY MLKSLMKAAE MRGHSFWARG 480 PDNAGSYSSH PHETGFFCDE GDYDGYYGRF FLNWYSQLLI NHGDLVLSLA KLAFEGSCIA 540 AKLPGIHWWY KTSSHAAELT AGFYNPCNRD GYIAIAAMLH KHGAALNFAR AELQFLEQRE 600 DLQEALANPQ GLVWQVLNAA WETCITVVSE NAFVCHDRVG YNKILENVKP VNDPDGRHFS 660 SFTYLRLTPL LMERQNFMEF ERFVKRMHGE AVLYLQRKEI MSFGKEKLET VSISYGKERL 720 KYLDQSMLKK KTDLSIN

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MSADMQKLIG ANEEDDEEEI EMDVKEEDNE DHENGQKHIA AQMMLGADGV MPSTSHQFQI  60
QQQLQEQVST PGGGAWRSRP LEEKERTKLR ERHRRAITAR ILAGLRKHGN YNLRVRADIN  120
DVIAALAREA GWVVLSDGTT FPSRSQGSRP AGDSSAGLTS SSSQMLSQQV PPTSLQGVSS  180
GYCASVEYNA CHMKGVFMPT PAPYDLSSSG HSQSSGMVGN GGEQTESLPL IAGSMEVINE  240
QIIGLPPKLP ERDFAGTPYV PVYVMLPLGV VNMKCELVDP DGLLKQLRVL KSINVDGVMI  300
DCWWGIVEAD APQEYNWNGY RRLFKMVHEL KLKLQVVMSF HECGGNVGDD VCIPLPHWVA  360
EIGRSNPDIF FTDREGRRNT ECLSWGIDKE RVLRGRTAVE VYFDFMRSFR VEFNEFFEDG  420
IISMVEVGLG PCGELRYPSC PVKHGWRYPG IGEFQCYDQY MLKSLMKAAE MRGHSFWARG  480
PDNAGSYSSH PHETGFFCDE GDYDGYYGRF FLNWYSQLLI NHGDLVLSLA KLAFEGSCIA  540
AKLPGIHWWY KTSSHAAELT AGFYNPCNRD GYIAIAAMLH KHGAALNFAR AELQFLEQRE  600
DLQEALANPQ GLVWQVLNAA WETCITVVSE NAFVCHDRVG YNKILENVKP VNDPDGRHFS  660
SFTYLRLTPL LMERQNFMEF ERFVKRMHGE AVLYLQRKEI MSFGKEKLET VSISYGKERL  720
KYLDQSMLKK KTDLSIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wds_A	1e-152	259	690	11	444	Beta-amylase
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016694833.1	0.0	PREDICTED: beta-amylase 7-like isoform X1
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A1U8K1H7	0.0	A0A1U8K1H7_GOSHI; Beta-amylase
STRING	Gorai.007G099100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2945	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]