PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0826
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 496aa    MW: 54127.7 Da    PI: 8.9601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0826genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.3e-15293338555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Gh_D11G0826 293 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 338
                  9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-18285349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-18293346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-16293342No hitNo description
PfamPF000103.5E-13293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSQCVPSWDL DDHHVTARHS LRSNSNSTAP DVHMSDYEVA ELTWENGQLA MHGLGPARVP  60
AKPLVSNPPS KYTWDKPRAN GTLESIVNQA TRVPYLKVSL DDGRDELVPC LNKHREAAAS  120
SATIAMDALV PCSKRTEGRT AHAMESIPGL GRTCLVGGST RVGSCSGRAG TNDDEVLVSG  180
KRTRAARAPL MPEWSSKEQS ASASATFGRE RDSRCVTLDT YEKDFGMGFT STSLGSPENA  240
SSTKPCTKAT TTADDHDSVC HSRPQAKKEF EEDKKETGKS SVSNKRSRAA AIHNQSERKR  300
RDKINQRMKT LQKLVPNSSK TDKASMLDEV IEYLKQLQAQ VQMMNRMNIP QMMLPMAMQQ  360
PLQMSMLAPA MGMGMGMGMG MGMGVMDINT IGRPNITGIS PVMPNPFMAM TSWDGSGERL  420
QQAASAAAMM PDPLSTFLAC QSQVTFVSHH VCVYRLSILL SKINRTLLQP MTMDAYSRLA  480
AMYQQMQQPP ASGSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296301ERKRRD
2297302RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.162270.0ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3932931e-116GQ393293.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0258 SSR marker CGR5167 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694956.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ381e-108UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0D2QP680.0A0A0D2QP68_GOSRA; Uncharacterized protein
STRINGGorai.007G088300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-107bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]