PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G0738

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 487aa MW: 53250 Da PI: 7.214

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G0738	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	123	183	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Gh_D11G0738 123 PTKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 183 67899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-32	105	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-32	125	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MTWHINLFKQ IKNVDSTRPS SIIPPFSPYN QILKLQDRDT VGAKTTDVEH EVADRKEEEG 60 SKPDDGAPPV TSGESTNLEA NSGASDNSKT PSAEKESTAL KTSKTEEDQS ETSNPQEKTL 120 KKPTKILPCP RCNSMDTKFC YYNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKNK 180 NSASHYRQVT VSEALQNARI DIPNGVHHPA LKANGTVLTF GSDAPLCESM ASVLNLADKT 240 MHNTTRNGFH RPEELKIPVS YKDGENGVEC SNGSSVPTSK DEAGKSGLQD QMMQNCQGFP 300 PQMQCYPGAF WPYPWNSAQW SSPVPPPPPA FCPPGCYPMP FYPAAAYWGC TVPGTWNGPW 360 HPQPSPSKQS ASSSGPDSPT LGKHSRDENT SKPSNSGEEE QVKENNAERS LWIPKTLRID 420 DPGEAAKSSI WATLGIKNDK SDSIGGGGLF KAFQSKGDER TEVPETSPVL QANPAALSRS 480 INFRESS

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MTWHINLFKQ IKNVDSTRPS SIIPPFSPYN QILKLQDRDT VGAKTTDVEH EVADRKEEEG  60
SKPDDGAPPV TSGESTNLEA NSGASDNSKT PSAEKESTAL KTSKTEEDQS ETSNPQEKTL  120
KKPTKILPCP RCNSMDTKFC YYNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKNK  180
NSASHYRQVT VSEALQNARI DIPNGVHHPA LKANGTVLTF GSDAPLCESM ASVLNLADKT  240
MHNTTRNGFH RPEELKIPVS YKDGENGVEC SNGSSVPTSK DEAGKSGLQD QMMQNCQGFP  300
PQMQCYPGAF WPYPWNSAQW SSPVPPPPPA FCPPGCYPMP FYPAAAYWGC TVPGTWNGPW  360
HPQPSPSKQS ASSSGPDSPT LGKHSRDENT SKPSNSGEEE QVKENNAERS LWIPKTLRID  420
DPGEAAKSSI WATLGIKNDK SDSIGGGGLF KAFQSKGDER TEVPETSPVL QANPAALSRS  480
INFRESS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.12011	0.0	ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016695234.1	0.0	PREDICTED: cyclic dof factor 3-like isoform X1
TrEMBL	A0A1U8K3Q3	0.0	A0A1U8K3Q3_GOSHI; cyclic dof factor 3-like isoform X1
STRING	Gorai.007G079300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-100	cycling DOF factor 2