PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0511
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 314aa    MW: 34020.3 Da    PI: 7.5016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0511genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-191661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll ++v+++G+++W+++++ ++ gR++k+c++rw + 
      Gh_D11G0511 16 KGPWSPEEDDLLQKLVQKYGPRNWSLVSKSIP-GRSGKSCRLRWCNQ 61
                     79******************************.***********985 PP
2Myb_DNA-binding57.33.6e-1870112347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
      Gh_D11G0511  70 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.7721166IPR017930Myb domain
SuperFamilySSF466894.12E-3213109IPR009057Homeodomain-like
SMARTSM007172.5E-171564IPR001005SANT/Myb domain
PfamPF002493.2E-191661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-261769IPR009057Homeodomain-like
CDDcd001672.23E-161860No hitNo description
SMARTSM007173.8E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129421.46768117IPR017930Myb domain
CDDcd001671.58E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2370116IPR009057Homeodomain-like
PfamPF002491.2E-1570112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAVTSTSNKK EMDRIKGPWS PEEDDLLQKL VQKYGPRNWS LVSKSIPGRS GKSCRLRWCN  60
QLSPQVEHRA FTPEEDETII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKCLSV  120
GEESYFITHG GYDGNLGGEG EQQPLKRSVS AGLYMSPGSP SGSDLSDSSV PVLSSSHVYK  180
PIPRTGGVNV DVNVMPLPGA EAAASSSNDP PTSLSLSLPG AESYELSVST LPVTESTQTR  240
NEAKNDGKGG GVMGFSAEFM AVMQEMIRME VRDYMVQMQQ QNGGVSGGEG MGMCLDAGFR  300
NVLSMSRVGV NKID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-42151173105MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-42151173105C-Myb DNA-Binding Domain
1msf_C5e-42151173105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.92090.0boll| ovule| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591222e-68AJ459122.1 Gossypium hirsutum partial myb104b gene, clone pGhMYB104b.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016731006.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231601e-108MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1U8MVZ10.0A0A1U8MVZ1_GOSHI; transcription factor MYB44-like
STRINGGorai.007G055600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-92myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]