PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0469
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 297aa    MW: 33395.5 Da    PI: 9.0022
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0469genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.75.6e-3392147460
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  +rY+eClkNh as+Ggh+vDGCgEfmps ge+gt++alkCaAC+CHRnFHR+e + e
  Gh_D11G0469  92 IRYRECLKNHVASMGGHVVDGCGEFMPS-GEDGTQEALKCAACECHRNFHRKEIDGE 147
                  79*************************9.999********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.2E-3092144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2192145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-3093144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1994143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-29219295IPR009057Homeodomain-like
SuperFamilySSF466891.33E-19222294IPR009057Homeodomain-like
TIGRFAMsTIGR015656.5E-27233290IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEVKGQDKEM GMPSSFSCNN KLNQADSSLK LSSSSAPINQ SRTLDQYNEP NPSQHQIDNP  60
RSNPDHDRNP VSSPIPTVAA PTSTTISSTP LIRYRECLKN HVASMGGHVV DGCGEFMPSG  120
EDGTQEALKC AACECHRNFH RKEIDGETQY PATRCCFTYK NNGRRGPVHP QQPTPLRQQR  180
FSLELSNSPC LPIAPAAMTN FRGGPAESSS EELNMFHSNE AGGRQPSYPQ SSKKRFRTKF  240
SRDQKDKMME FAEKLGWRIQ KQDEPEVQQF CAQVGVKRQV FKVWMHNSKQ AMKKKQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-232322891673ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695531.10.0PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBLA0A1U8JZ180.0A0A1U8JZ18_GOSHI; zinc-finger homeodomain protein 2-like
STRINGGorai.007G050500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65152543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.15e-64homeobox protein 24