PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0427
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 218aa    MW: 24494.6 Da    PI: 6.3976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0427genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1899149255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp+     +r++lg+f+t  +Aaka++ a+ k++g
  Gh_D11G0427  99 HYRGVRRRP-WGKFAAEIRDPTRK--GRRVWLGTFDTDVDAAKAYDCAAFKMRG 149
                  7********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-3198158IPR001471AP2/ERF domain
PfamPF008471.5E-1399149IPR001471AP2/ERF domain
SMARTSM003803.7E-3699163IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2299158IPR016177DNA-binding domain
PROSITE profilePS5103224.2599157IPR001471AP2/ERF domain
PRINTSPR003674.1E-13100111IPR001471AP2/ERF domain
CDDcd000186.87E-24107157No hitNo description
PRINTSPR003674.1E-13139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTSVEESTTL DFIHQHLLGD FPSADAFISS LDFGLSQLQN YQVPELYQPH SPVSDPNCRI  60
PEIFSHDVKP EVVELESPSV FISGSKMEQK VLVCEERRHY RGVRRRPWGK FAAEIRDPTR  120
KGRRVWLGTF DTDVDAAKAY DCAAFKMRGQ KAILNFPLEA GQATPPATTC RKRGKEKGNK  180
SPESDVMSLV SSELASAVVK EEEDKPIDGQ NITCHHYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2998158161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-2998158464ATERF1
3gcc_A5e-2998158464ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098742920.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725837.11e-164PREDICTED: ethylene-responsive transcription factor ERF107-like
TrEMBLA0A1U8MG901e-163A0A1U8MG90_GOSHI; ethylene-responsive transcription factor ERF107-like
STRINGGorai.007G046100.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-40ERF family protein