PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G0383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 509aa MW: 55852.8 Da PI: 5.1622 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.8 | 1.6e-12 | 166 | 188 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e+C ++++tG Ck+G++CkF+H+ Gh_D11G0383 166 ENCAYYMKTGLCKFGSNCKFNHP 188 89********************9 PP | |||||||
2 | zf-CCCH | 30.4 | 6.5e-10 | 211 | 236 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C++++rtG Ck+G C+++H++ Gh_D11G0383 211 GQTECKYYLRTGGCKFGKACRYNHSR 236 6789********************95 PP | |||||||
3 | zf-CCCH | 39.3 | 1.1e-12 | 257 | 281 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Gh_D11G0383 257 GEKECPYYMRNGSCKYGANCRFNHP 281 6789********************9 PP | |||||||
4 | zf-CCCH | 26.7 | 9.6e-09 | 395 | 421 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ Gh_D11G0383 395 PGQPECSYFLKTGDCKFKSNCKYHHPK 421 5789*********************96 PP | |||||||
5 | zf-CCCH | 36 | 1.1e-11 | 442 | 467 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++r+G+Ck+G+ CkF H++ Gh_D11G0383 442 DQSICSHYSRYGICKFGPACKFDHSM 467 6789********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.126 | 162 | 190 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2E-5 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-6 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-10 | 166 | 188 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 168 | 187 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.652 | 209 | 237 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-5 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-7 | 211 | 236 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-5 | 212 | 237 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 215 | 236 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.004 | 255 | 283 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-6 | 255 | 282 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 257 | 283 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-10 | 257 | 281 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 261 | 280 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 394 | 421 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 394 | 422 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-6 | 396 | 421 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 398 | 424 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 438 | 466 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 440 | 467 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.305 | 440 | 468 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-9 | 442 | 466 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 444 | 467 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MGWLNMSWKP WLRFGSSFQA LWVLKCGFTM SQSEEAPISD TTAPADSALN TLGHRSPDSD 60 PTPNPDASPT PSDLNRAAEE TGHDESNLEQ QLQDLDLKEE VAAAVAAAET KDDGERKGDN 120 DYNEADAGAA EEKEDEEEKN ENENDGENGK RFEGVRSHFP VRPDAENCAY YMKTGLCKFG 180 SNCKFNHPVR RKNQGVQENL KENDESTEKP GQTECKYYLR TGGCKFGKAC RYNHSRAKSS 240 TDPILELNFL GLPIRQGEKE CPYYMRNGSC KYGANCRFNH PDPTTTGACD PPAAYGNGGS 300 VSSQAASQVS MASWSSPRAL NETATATFMP IMFSPTPGVP PPNPEWNGYQ ATIYPPPERI 360 LHPTPAYVMS SPSTETTVYT QNQPQMVVDE FPVRPGQPEC SYFLKTGDCK FKSNCKYHHP 420 KNRLAKPAPC ALSDKGLPLR PDQSICSHYS RYGICKFGPA CKFDHSMQAA PSTTVSELEQ 480 PPPFSHSAPL EQTGIAGSNG TDTAVQQPV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2787 | 0.0 | boll| ovule| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016695629.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 67-like | ||||
Swissprot | Q9STM4 | 1e-137 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A1U8K4T9 | 0.0 | A0A1U8K4T9_GOSHI; zinc finger CCCH domain-containing protein 67-like | ||||
STRING | Gorai.007G041600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4176 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-130 | C3H family protein |
Publications ? help Back to Top | |||
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