PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G0332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 23858.9 Da PI: 7.2544 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.5 | 6.6e-05 | 27 | 76 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+ + erE+ R+++N+ f L l ++ ++ + Ka+iL +A++ +k+L Gh_D11G0332 27 KRVHKAEREKLKREHLNELFLDLANALDPN----QPNNGKASILCEATRLLKEL 76 79999**********************887....56799999*****9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.34E-5 | 24 | 76 | No hit | No description |
SuperFamily | SSF47459 | 1.03E-10 | 25 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.798 | 26 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-7 | 26 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGSETNAAVK TSVGRSCVPK TKGKVPKRVH KAEREKLKRE HLNELFLDLA NALDPNQPNN 60 GKASILCEAT RLLKELFGQI ESLKKENASL VSESHYVNVE KNELQEENST LETQIQELKS 120 EIGTRVAQSK PDLNEPPPLP SQFHGDHHPG LPAVEPVPQQ SSALLVVPIH PDIQTYPTPD 180 SGTQQQPAPK TNCVVSKPHA RYPTPADSWP SQLLGKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15153 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016695693.1 | 1e-158 | PREDICTED: transcription factor bHLH47 | ||||
Refseq | XP_016695694.1 | 1e-158 | PREDICTED: transcription factor bHLH47 | ||||
Refseq | XP_016695695.1 | 1e-158 | PREDICTED: transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 3e-64 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A1U8K3Y5 | 1e-157 | A0A1U8K3Y5_GOSHI; transcription factor bHLH47 | ||||
STRING | Gorai.007G036700.1 | 1e-155 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11720 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-66 | bHLH family protein |