PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0328
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 89aa    MW: 9977.29 Da    PI: 5.0187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0328genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.34.9e-0719561855
                 HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                   + +L++llP+ + + +++++s a +L + + YI+ Lq
  Gh_D11G0328 19 ALILRLQTLLPQlD-QSRHGRVSAAKVLNEICSYIRRLQ 56
                 56889*******55.9**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.5E-61659IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-71671IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-41956IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSQRSTSSN KITDDELTAL ILRLQTLLPQ LDQSRHGRVS AAKVLNEICS YIRRLQNEVD  60
GLSGRLSQCL DSMDLTGFDA EIVRDLLQQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694622.11e-57PREDICTED: transcription factor PRE6-like
TrEMBLA0A1U8JWG73e-56A0A1U8JWG7_GOSHI; transcription factor PRE6-like
TrEMBLA0A2P5R3V53e-56A0A2P5R3V5_GOSBA; Uncharacterized protein
STRINGGorai.007G036300.13e-56(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.15e-15bHLH family protein