PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G0263

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 228aa MW: 25655.4 Da PI: 5.8694

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G0263	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.8	2.6e-18	61	110	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a++ ++ge Gh_D11G0263 61 YRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFETAEMAARAHDVAALTIKGE 110 9**998.******854...6*********************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.3E-37	60	123	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.314	60	117	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.75E-22	60	119	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	6.9E-33	60	119	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-11	61	72	IPR001471	AP2/ERF domain
CDD	cd00018	7.45E-33	61	119	No hit	No description
Pfam	PF00847	6.7E-12	61	110	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-11	83	99	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSTTEVPLIA ASETQSSSSP PENESAAEIF KSERTRKPET GNERKGKVKN DEIFEGKHQT 60 YRGVRMRQWG KWVSEIREPK KKSRIWLGTF ETAEMAARAH DVAALTIKGE SAYLNFPDSA 120 HELPRPRSSS PKDIQAAAAK AAAMSFTKSS HKHDDDGADQ LIPHRDSSSS SSPLINDDAF 180 IDLPDLLMHM NHRIDEFWVS FPWPVTATDD DIVENGFGYS ESRLREYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-18	58	117	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488784.1	1e-169	PREDICTED: ethylene-responsive transcription factor ERF038-like isoform X1
Refseq	XP_016694632.1	1e-169	PREDICTED: ethylene-responsive transcription factor ERF038-like
Swissprot	Q9ZQP3	1e-52	ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBL	A0A0D2QK73	1e-167	A0A0D2QK73_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8JWH7	1e-167	A0A1U8JWH7_GOSHI; ethylene-responsive transcription factor ERF038-like
STRING	Gorai.007G028800.1	1e-168	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2492	23	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	2e-52	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]