PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0245
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1231aa    MW: 138099 Da    PI: 8.0689
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0245genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23130230198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+kvlt sd++++g +++ +k+a+++     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+
  Gh_D11G0245 130 FCKVLTASDTSTHGGFSVLRKHATDClpkldMNDATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENGELR 225
                  99****************************9555555669************************************************..449999** PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  v+v+r
  Gh_D11G0245 226 VGVRR 230
                  ***98 PP
2Auxin_resp1033.9e-34256335183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+st++ F v+Y+Pr+  s+F++ ++k+++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p  W++SkWrsLk
  Gh_D11G0245 256 ASHAVSTQTLFVVYYKPRT--SQFIIGLNKYLEALSNKFAVGMRFKMKFEGEDSPERRFSGTIVGVEDFSP-LWKDSKWRSLK 335
                  789***************6..9*************************************************.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-39122245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-39123259IPR015300DNA-binding pseudobarrel domain
CDDcd100176.12E-18128224No hitNo description
PROSITE profilePS5086312.167130232IPR003340B3 DNA binding domain
SMARTSM010191.6E-23130232IPR003340B3 DNA binding domain
PfamPF023621.1E-21130230IPR003340B3 DNA binding domain
PfamPF065071.9E-31256335IPR010525Auxin response factor
PfamPF023091.5E-11565670IPR033389AUX/IAA domain
SuperFamilySSF542775.89E-13585661No hitNo description
PROSITE profilePS5174527.011585666IPR000270PB1 domain
PfamPF035524.1E-18885970IPR005150Cellulose synthase
PfamPF035522.1E-1310061102IPR005150Cellulose synthase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0030244Biological Processcellulose biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0016760Molecular Functioncellulose synthase (UDP-forming) activity
Sequence ? help Back to Top
Protein Sequence    Length: 1231 aa     Download sequence    Send to blast
MMANRVESFS QTNNVSSEGN GCDDLYMELW KLCAGPLVEV PRAEQRVYYF PQGHMEQLEA  60
STNQTLNQRI PLFNLPSKIL CRVVHIQLLA EKETDEVYAQ VTLLPEPSQP EPTTPDLCPP  120
ESQRPTVHSF CKVLTASDTS THGGFSVLRK HATDCLPKLD MNDATPTQEL VAKDLHGYEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRR VVRQHSIIPS  240
SVISSQSMHV GVLATASHAV STQTLFVVYY KPRTSQFIIG LNKYLEALSN KFAVGMRFKM  300
KFEGEDSPER RFSGTIVGVE DFSPLWKDSK WRSLKVQWDE PASIPRPDRV SPWEIEPFAA  360
PIPPSLTQPV AAKNKRPRPP AEIPAPDLSS TTSAPYSGVT HCHDLTPQNI AAEAKGNENP  420
VMGHHMWTEM SSGCSSVAKA LNKGSWLSSP GTCVPHHLFP DAREDKTRFS AWPVPSGFSN  480
PQLNEDSTFD STEKAKRSET AASCRLFGID LINHSTSSTP LERTPAQLST MIMGTTEVPG  540
PSTLSSTYSD QKSEISKDSK EKKLEQLQLS AKENQSMQSC SSFTRSRTKV QMQGIAVGRA  600
VDLAIFEGYG QLIDELEEMF DIKGELRPRN KWEIVYTDDE GDMMLVGDDP WPEFCNMVRR  660
IFICSSQDVK KLKTGSKLPL ASIEGEGTLY FVLQHIAAKR SGLLVGRYNR VTGSQQKVVT  720
GTAGLDEDYS SHLDYDLVSY FIHSSSIFTD LFVKRKTIYG GYTPKTTEEP CLRDCTAAHV  780
PLLLHTLKPS HDGRSQTVCL RQFTLVLSKN GITTRSPDEY FASNYSRTIE AEKIKVMYES  840
MKFRKENVVE TGRVDDEYIT VARKHHQAFS KWRTDHGFTR QNHPSNSDCN MYSNDPRTPF  900
LAFCYVLDPE IRNRLAYIQF PQEFHGLNET DSYAGRLIRL FKLNPTGLDG LSGPNYMGTC  960
SFIRRRSLFG DPLTLVSPEI RELSPDYVVN NPITSPSVLE VAHRVAGCRW RSIFCNPEKA  1020
AFMGNAPLNL LDVPFQNKRW QIGLLEVASS RYSPITFGVK AMGLFMGLGY SSYAYSSILS  1080
IPITTYSFVP QLALLNGLNI FPKGFNVTRK VIDDEPRKRY EQGLSEFGVS SAMFVPLTMA  1140
AVVNLFSFTY GLIHFVNGSN KEMGLKKKEN EFICERSGEM HADGVHQKLC LLSELQIGVR  1200
VNISGGANRF HGNKKEKIPR LIGVDIEKDF R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16893581355Auxin response factor 1
4ldw_A1e-16893581355Auxin response factor 1
4ldw_B1e-16893581355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374378KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.221330.0boll| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3950383e-77GQ395038.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2061 SSR marker DPL0522 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686335.10.0PREDICTED: auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1U8J7L70.0A0A1U8J7L7_GOSHI; Auxin response factor
STRINGGorai.007G026900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9