PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0239
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 296aa    MW: 32994.3 Da    PI: 9.1654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0239genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-19111159355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+g
  Gh_D11G0239 111 YRGVRQRR-WGKWVAEIRLPQN---RNRVWLGTYETAETAALAYDRAAYKLRG 159
                  9****998.**********965...48************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-22110167IPR016177DNA-binding domain
SMARTSM003801.1E-35110173IPR001471AP2/ERF domain
PROSITE profilePS5103223.024110167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-30110168IPR001471AP2/ERF domain
PfamPF008472.0E-13111159IPR001471AP2/ERF domain
CDDcd000181.12E-30111169No hitNo description
PRINTSPR003672.5E-10111122IPR001471AP2/ERF domain
PRINTSPR003672.5E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MQKTDHVCGF NDGANIGSSL SQLILSGGSN TIDSIFSRCA PSSTMAGVYE PLGSSVYHRQ  60
RDLLEKFSHE KKENASFSFK CLTNPIQNGQ NHASTTAAAK YLSSPQKKNL YRGVRQRRWG  120
KWVAEIRLPQ NRNRVWLGTY ETAETAALAY DRAAYKLRGD YARLNFPNLK DPSKFGFVDC  180
AQFNALKNMV DAKIQAICQK MKTERTKKKA KKGNFDRPGC SSSSSLSPMV FSDDLSKELM  240
SPTVSGDGFL RAENSSSSVS NDYPMMVVAE EQPFEDELLA RMPSFDAELL WDCLAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21111167360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686339.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W22e-57ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1U8JDL40.0A0A1U8JDL4_GOSHI; ethylene-responsive transcription factor ERF061-like
STRINGGorai.007G026200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.17e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]