PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0132
Common NameWRKY56
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 334aa    MW: 36769.6 Da    PI: 6.3984
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0132genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.3e-28134195159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK++  s+fpr+YYrCt++   gC ++k+v+rs++dp++++itY g+H+++
  Gh_D11G0132 134 LDDGFSWRKYGQKDILRSRFPRGYYRCTHRninGCLATKQVQRSDDDPTIFDITYVGTHTCR 195
                  59***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-28128196IPR003657WRKY domain
PROSITE profilePS5081121.333129192IPR003657WRKY domain
SuperFamilySSF1182901.83E-25133195IPR003657WRKY domain
SMARTSM007743.7E-38134196IPR003657WRKY domain
PfamPF031067.4E-27135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEKMGEWEQR SLVSELTQGR EVARQLQAHL NGASSSSSSY DIETREVLVQ KIEASYEKAL  60
SILNCNVNTS SASAVVPLTP VIRMPESPNS PCGSPPSEDS DRSFRVSDAS KKRKAPRWTQ  120
QVRVTPGTAL EGPLDDGFSW RKYGQKDILR SRFPRGYYRC THRNINGCLA TKQVQRSDDD  180
PTIFDITYVG THTCRNVTSH LMSEKNQEQG PSASSMAAVE PQSSSSSQDL LLNFQKGLKV  240
KTQDLEDQTY ASLIPYTSST SNVVFSWPSV IDNNRNFVSP ATSGTDFGFG TCDDQIIQAS  300
AAASVTSSPT VGLDHFHQLD GNFTFDSNGF FRHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-21134195869OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.92120.0ovule| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738641180.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697790.0KF669779.1 Gossypium hirsutum WRKY transcription factor 56 (WRKY56) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686479.10.0PREDICTED: probable WRKY transcription factor 53
SwissprotQ8H0Y83e-55WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLA0A1U8JE040.0A0A1U8JE04_GOSHI; probable WRKY transcription factor 53
STRINGGorai.007G014600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-56WRKY family protein
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]
  2. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]