PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0117
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 300aa    MW: 33014.2 Da    PI: 9.618
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0117genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.6e-133983147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
      Gh_D11G0117 39 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 83
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-163389IPR009057Homeodomain-like
PROSITE profilePS5129414.7463488IPR017930Myb domain
TIGRFAMsTIGR015571.0E-183786IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.4E-63879IPR009057Homeodomain-like
SMARTSM007172.7E-103886IPR001005SANT/Myb domain
PfamPF002491.1E-103983IPR001005SANT/Myb domain
CDDcd001676.65E-84184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MALPGLGPLS TAETAASTVS SSEDPNKKIR KPYTISKSRE SWTEPEHDKF LEALQLFDRD  60
WKKIEAYVGS KTVIQIRSHA QKYFLKVQKS GTSEHLPPPR PKRKAAHPYP QKASKNAVLG  120
QPQVSEPLQS PAALLDTGYV LRSNPSLMLA DPVTRAAASP QTNNAQTISF AQDKKGPGMA  180
NNSCSSTEST RKTTEVGDTT DQGNHGHALR VLPDFAQVYS FIGSVFDPNA KGHMQKLKKM  240
DPIDVETVLL LMRNLSINLT SPDFEDHRRL LSSYEIDTET NNINSGACKA VDNNQSKRIT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686492.10.0PREDICTED: protein REVEILLE 6-like isoform X1
RefseqXP_016686493.10.0PREDICTED: protein REVEILLE 6-like isoform X1
SwissprotQ8H0W31e-128RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1U8JCT30.0A0A1U8JCT3_GOSHI; protein REVEILLE 6-like isoform X1
STRINGGorai.007G013200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-112MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]