PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0108
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 625aa    MW: 67592 Da    PI: 6.3937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0108genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.97.3e-1102576252374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++++l++A a+s+g++  ++++L+rl + a+++g++ qRl  +++ AL++r+++    + +  p+ e     s+e++a+++l++++sP++k+++l+aN
  Gh_D11G0108 257 KQTILDAAAAISEGKNDVVNEILTRLAQAANSKGSSEQRLMECMLSALKSRVNS----VENPPPVAEL---FSKEHAASTQLLYDLSPCFKLGFLAAN 347
                  57899************************************************9....4443344333...499************************ PP

         GRAS 100 qaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  qaIl+a+  +   ++ H++Dfd + G+Q+++Ll+aL++R +g+p +++iT++++  +g  e+l+++g+rL++fAe+ gv+++fnv+   +l+dl+ ++
  Gh_D11G0108 348 QAILDATLDKpsyNKFHVVDFDFGLGGQYMNLLHALSERGNGKPaTVKITAIAD--NGGDERLKTVGDRLSQFAESYGVSLKFNVISGLKLSDLSRDS 443
                  *******998888999***********************977666*********..77***************************9888********* PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  L ++++E laVn++++l+r++desvs+e++rde+L+ vk+l P+v+++veqe+++n+++F+ r+ ea+ yy alfds+e+++ r++ +r+k+E+  l 
  Gh_D11G0108 444 LGIEQDEPLAVNFAFKLYRMPDESVSIENPRDELLRRVKGLAPRVLTLVEQEMNTNTAPFASRVGEACGYYGALFDSVESTVLRDNPDRAKLEEG-LL 540
                  ***********************************************************************************************.88 PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+i n vaceg++r+er+e ++kWr+r+++aGF+  pls+++a+++++ l+  +  + g++v+ee+g + +gW +r+L+++SaWr
  Gh_D11G0108 541 RKIANSVACEGRDRVERCEVFGKWRARMSMAGFELKPLSQTVAETMRAKLNSGNrvNPGFTVKEENGGVNFGWLGRTLTVASAWR 625
                  9***********************************************9998777789**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.985230603IPR005202Transcription factor GRAS
PfamPF035142.5E-107257625IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MASGFSGGGP DFYGGLAGRS VGNTGTINNN QTTAPYRTQV PGMFMDTSSQ IVNRATPGFI  60
GKRTLADFQT QQALNNNSGR LFLRSVKPRT YQHTSPISPL SPIDLPFNLS PDVMSNFSSP  120
SSCMSQRYGL PLLQQLRPQQ VPLGINTGAT IQAVSTGLSG GPYMNQVSTR VVQPHDPEKK  180
MMNQLQDLEK QLLDDDNDEG DAVSVITNTN SEWSETIQNL IGSTGSPNNP IAPSPTSTTS  240
SCSSTSSTAS PASPCSKQTI LDAAAAISEG KNDVVNEILT RLAQAANSKG SSEQRLMECM  300
LSALKSRVNS VENPPPVAEL FSKEHAASTQ LLYDLSPCFK LGFLAANQAI LDATLDKPSY  360
NKFHVVDFDF GLGGQYMNLL HALSERGNGK PATVKITAIA DNGGDERLKT VGDRLSQFAE  420
SYGVSLKFNV ISGLKLSDLS RDSLGIEQDE PLAVNFAFKL YRMPDESVSI ENPRDELLRR  480
VKGLAPRVLT LVEQEMNTNT APFASRVGEA CGYYGALFDS VESTVLRDNP DRAKLEEGLL  540
RKIANSVACE GRDRVERCEV FGKWRARMSM AGFELKPLSQ TVAETMRAKL NSGNRVNPGF  600
TVKEENGGVN FGWLGRTLTV ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4025562511375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.104370.0boll| ovule| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686514.10.0PREDICTED: scarecrow-like protein 8 isoform X2
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1U8JE400.0A0A1U8JE40_GOSHI; scarecrow-like protein 8 isoform X2
STRINGGorai.007G012300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-176SCARECROW-like 8