PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2614
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 195aa    MW: 22300.2 Da    PI: 8.587
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2614genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-081243132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+W++eEd++l+ ++k++G  +W+  a+  g
      Gh_D10G2614 12 KGAWSPEEDKKLIAYIKRYGIWNWAEMAKPAG 43
                     79******************99****999777 PP

2Myb_DNA-binding59.66.9e-1991134247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g++T+eE+e ++d++++lG++ W+ Ia++++ gRt++++k++w+ +
      Gh_D10G2614  91 GNFTKEEEETIIDLHEKLGNR-WSVIASKLP-GRTDNEIKNHWHAH 134
                      89*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.918784IPR017877Myb-like domain
SuperFamilySSF466898.73E-2710131IPR009057Homeodomain-like
SMARTSM007178.6E-71186IPR001005SANT/Myb domain
PfamPF002492.7E-61245IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-221391IPR009057Homeodomain-like
CDDcd001672.21E-61484No hitNo description
PROSITE profilePS5129426.70685139IPR017930Myb domain
SMARTSM007173.5E-1789137IPR001005SANT/Myb domain
PfamPF002491.0E-1691134IPR001005SANT/Myb domain
CDDcd001671.68E-1292135No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2692140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAKSVENRAL KKGAWSPEED KKLIAYIKRY GIWNWAEMAK PAGKKNPEID CLYYDFCWVF  60
YGFCLFVGLQ RSGKSCRLRW VNYLRPGIKH GNFTKEEEET IIDLHEKLGN RWSVIASKLP  120
GRTDNEIKNH WHAHLSKRLK YDLNSLPDMS DAEIDQYSSF ETDPPPTNVP NALISESSAA  180
TSTNSLPSSS SNPKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-24313918128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591836e-68AJ459183.1 Gossypium hirsutum partial myb153 gene, clone pGhMYB153.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711418.11e-114PREDICTED: myb-related protein Myb4-like
RefseqXP_016711419.11e-114PREDICTED: myb-related protein Myb4-like
RefseqXP_017648231.11e-114PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH43e-45MYB4_ORYSJ; Transcription factor MYB4
SwissprotQ9SJX82e-45MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A0B0P5101e-113A0A0B0P510_GOSAR; Myb-related Myb4
TrEMBLA0A1U8LE211e-113A0A1U8LE21_GOSHI; myb-related protein Myb4-like
TrEMBLA0A2P5WSG11e-113A0A2P5WSG1_GOSBA; Uncharacterized protein
STRINGGorai.011G021300.11e-105(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-47myb domain protein 14
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]
  3. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]