PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G2478 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 413aa MW: 44708 Da PI: 6.3521 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 60 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G ++W++Iar ++ gR++k+c++rw + Gh_D10G2478 60 KGPWSPEEDAVLSRLVAKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 105 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 5.9e-18 | 112 | 156 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ Gh_D10G2478 112 RKPFTDEEDRIIISAHAIHGNK-WASIAKLLP-GRTDNAIKNHWNST 156 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.342 | 55 | 106 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.39E-31 | 58 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 59 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-17 | 60 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 61 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.22E-14 | 62 | 104 | No hit | No description |
PROSITE profile | PS51294 | 26.922 | 107 | 161 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-17 | 111 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 112 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.06E-13 | 114 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-24 | 114 | 160 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MEDEKESNRQ DSPAAGGSGS GSGGDELELI VAESELGGGG GSGVGGGGGS SSNNNNTRVK 60 GPWSPEEDAV LSRLVAKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPCL KRKPFTDEED 120 RIIISAHAIH GNKWASIAKL LPGRTDNAIK NHWNSTLRRR CMELGRFKPG PADTMEDGGF 180 ERTKASSEET LSVGDVNHFK HLEGRDMVMD DRPNLQEDKP PIQEDQFAIE PKNHPAVCRP 240 VARVSAFSRY NTPSSSKTES GMTSRIPVQG PLAQSSRPDW GVGKILEDLR CEPIIPLRCG 300 FGCCSTPCGG HSRTSLLGPE FVDFEEPHVF SSHELISIAT DLNNIAWIKS GLENSCVRIP 360 SNATSQRMSQ GSDIHTKSDP MCFTDGQSKL TGMSTEVLPT QTCTMRSEVE GLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-40 | 59 | 160 | 6 | 107 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.11559 | 2e-55 | boll| ovule| stem |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455281.1 | 0.0 | PREDICTED: myb-like protein B | ||||
Swissprot | Q42575 | 1e-88 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A0D2TEM9 | 0.0 | A0A0D2TEM9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G278500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5638 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-109 | myb domain protein 109 |
Publications ? help Back to Top | |||
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