PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G2465

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 194aa MW: 21577.2 Da PI: 10.1486

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G2465	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.3	1.5e-12	72	116	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+ l++ ++k++G+g+W+ I+r + +t+ q+ s+ qky Gh_D10G2465 72 PWTIEEHRLFLLGIKKYGKGDWRNISRNFVDSKTPTQVASHAQKY 116 7***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.37	65	121	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-15	67	119	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.9E-15	68	117	IPR006447	Myb domain, plants
SMART	SM00717	2.8E-9	69	119	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-11	70	120	IPR009057	Homeodomain-like
Pfam	PF00249	4.3E-10	72	116	IPR001005	SANT/Myb domain
CDD	cd00167	5.62E-10	72	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MNGSNCKYVC TYRINLDLYC STSSKVADMI SGKTVSDSSF TLELVDNNDF YAYRKSSNGA 60 KGPNHERKKG IPWTIEEHRL FLLGIKKYGK GDWRNISRNF VDSKTPTQVA SHAQKYQKWK 120 LSRGKDEKKP GIHDVTVLDL TGTTVFSDDR KPPSANQSNV ASQQKPASTS KTSPNDGSAT 180 VFGLVNGQYV KSRL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.16075	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016723517.1	1e-119	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	6e-39	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A1U8M9L3	1e-117	A0A1U8M9L3_GOSHI; transcription factor DIVARICATA-like
STRING	Gorai.011G279700.1	1e-113	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36936	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05790.1	1e-40	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]