PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G2400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18897 Da PI: 9.2341 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.5 | 1.2e-39 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++slvyeAear+ dPvyG++g i lq+++ +l+++lal++ Gh_D10G2400 11 SCAACKLLKRRCSPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLVYEAEARLCDPVYGCIGAIALLQRKMIELQHDLALAR 108 6**********************************************************************************************998 PP DUF260 99 ee 100 ++ Gh_D10G2400 109 AR 110 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.057 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-39 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MRSHEPRSTS SCAACKLLKR RCSPTCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP 60 EEQREDTVNS LVYEAEARLC DPVYGCIGAI ALLQRKMIEL QHDLALARAR LARYAANYST 120 GVAGTELDRL TMTGLGMKLR ICYNIYIISG DEGRKKFLEG QKIILQSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-46 | 6 | 122 | 6 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-46 | 6 | 122 | 6 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21942 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016719179.1 | 1e-122 | PREDICTED: LOB domain-containing protein 21-like isoform X1 | ||||
Swissprot | Q9SRL8 | 1e-62 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A1U8M0U8 | 1e-121 | A0A1U8M0U8_GOSHI; LOB domain-containing protein 21-like isoform X1 | ||||
STRING | Gorai.011G291500.1 | 1e-119 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-60 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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