PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D10G2300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 24178.3 Da PI: 4.4962 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 4.9e-39 | 7 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf+ ++ +++fa+vhk+FGasnv+kll +lp ++r+da+ +++yeA ar+rdP+yG+v++i++lqqq++ l++e+++l Gh_D10G2300 7 SCGACKFLRRKCTNECVFAPYFCYDEaANHFAAVHKVFGASNVSKLLLHLPIHNRSDAAITIAYEALARIRDPIYGCVAHIFALQQQVAGLQEEIETL 104 6***********************9878******************************************************************9987 PP DUF260 98 ke 99 + Gh_D10G2300 105 IN 106 65 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.413 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-37 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MTGLGCSCGA CKFLRRKCTN ECVFAPYFCY DEAANHFAAV HKVFGASNVS KLLLHLPIHN 60 RSDAAITIAY EALARIRDPI YGCVAHIFAL QQQVAGLQEE IETLINQMAN HAVEVPIEAV 120 QFGSIDETMN TLYYQDEQAT LLNLQGSITG NQVVHSQLCE EDSAQHSFKW VEDSKFLSNI 180 HENPYEISFE GLEFGDLIDY PCMGNTGIPS NWEIPIL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-36 | 3 | 112 | 7 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-36 | 3 | 112 | 7 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012453851.1 | 1e-162 | PREDICTED: LOB domain-containing protein 33 | ||||
Refseq | XP_016717070.1 | 1e-162 | PREDICTED: LOB domain-containing protein 33-like | ||||
Swissprot | Q9LHS8 | 1e-54 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A0D2UYI0 | 1e-161 | A0A0D2UYI0_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8LR78 | 1e-161 | A0A1U8LR78_GOSHI; LOB domain-containing protein 33-like | ||||
STRING | Gorai.011G267700.1 | 1e-162 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06080.1 | 6e-57 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
---|---|---|---|
|