PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G2228

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 267aa MW: 30440.2 Da PI: 8.9083

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G2228	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.5e-05	161	199	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rR +++ +++ L++l+ + +K + a++Le+A YIk L Gh_D10G2228 161 RRSQKLSDKITALQKLVSPY-----GKTDIASVLEEASLYIKLL 199 7999************99.....9**************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.309	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.13E-7	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-6	161	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEGNIEAQMS YLDVLMRMET IGRNVEVDDA FSSESKTFNN GDQLGYGAFA APYQSHFNSD 60 LRDHQFGSFN FGTYFQPSMS LNNKLAIPHF ESDIQNLQNG RKRPSIEFHQ EQTPLNPTIA 120 LDEWNKNKRK KVSSFQQQQP AQQNIETVPG ISDSRLNMPV RRSQKLSDKI TALQKLVSPY 180 GKTDIASVLE EASLYIKLLH QHIQNLFQML RRSYNSPGAI HPPQETEKKQ DLRGRGLCLV 240 PISFAQKVTK EEKTIDTNSI SRTNNHP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453819.1	1e-180	PREDICTED: transcription factor bHLH123-like
TrEMBL	A0A0D2UXZ1	0.0	A0A0D2UXZ1_GOSRA; Uncharacterized protein
STRING	Gorai.011G255600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17246	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	6e-19	bHLH family protein