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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D10G2123 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
AP2 |
| Protein Properties |
Length: 480aa MW: 52410.8 Da PI: 7.5233 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D10G2123 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 51.4 | 2.7e-16 | 180 | 229 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I++ + k+++lg f+ta Aa+a+++a+ k++g
Gh_D10G2123 180 SQYRGVTFYRRTGRWESHIWE------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 229
78*******************......55************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 480 aa
Download sequence Send
to blast |
MLDLNLDIVS SESSCDENIN NSSSSNNNNN NNNNNVLVNG GAVTLTQMED SGSTKSSIIN 60
DEDFPSNAAV RDENSSDDAS ATFVFDILKK ETGDKTTNNF NTIVKKVENP SPDFVTRQLF 120
PVTGEKFGGL ELEFGSTKPL ARPQWLNLSY AESTGEAELT TFQIKPQPRK SRRGPRSRSS 180
QYRGVTFYRR TGRWESHIWE CGKQVYLGGF DTAHAAARAY DRAAIKFRGV DADINFTLCD 240
YEEDMKQMKH MSKEEFVHAL RRQNNGFSRG SSKNRGVALH KCGRLEARMG QFLGKKAYDM 300
AAMKCSGSEA VTNFEPSTYE GGGNGHYNLD LSLGISATRN GSNDTGDFSF RNTTGTGESS 360
GSVSVGVQPE HCQTIASKHP PMLSNVYPAA LLPYNEGRAI QMRAEAISSN WAWQMQGTGK 420
IITPTPVFPI AASSGFSSSI AIASSSSSPS PTFNNSGRNP CFPAPATSTN NTSHYYNYRS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX590337 | 3e-84 | JX590337.1 Gossypium hirsutum clone NBRI_GE25232 microsatellite sequence. |
