PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G2114

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 1721aa MW: 188016 Da PI: 6.2099

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G2114	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	814	855	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e++ + +G++ +++Ia+ + ++t +c+++++k Gh_D10G2114 814 PWTSQEKEIFMAKLAAFGKD-FRKIASFLD-HKTTADCVEFYYK 855 8***************99.*****.*********98 PP
2	Myb_DNA-binding	31.7	3.6e-10	1032	1072	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++g +R++ qck ++ Gh_D10G2114 1032 HWTDEEKSAFLQAVLSYGKD-FDMISRYVG-TRSRDQCKVFFS 1072 6***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.42E-13	798	859	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.387	810	861	IPR017884	SANT domain
SMART	SM00717	4.0E-7	811	859	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-5	814	855	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.272	1028	1079	IPR017884	SANT domain
SMART	SM00717	3.0E-8	1029	1077	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.79E-11	1030	1079	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-6	1030	1073	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-8	1032	1072	IPR001005	SANT/Myb domain
CDD	cd00167	3.95E-7	1033	1071	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1721 aa Download sequence Send to blast
MPPEPLPWDR KDFYKERKHE RTQSLPQQPL TARWRESSSM SPYQHASFRE FTRWGSADFR 60 RPPGHGRQGS WHLFAEENGG HGYVPSRSSD KILDDENFRQ LDSRVDGKYS RNSRENNRGS 120 SSQRDWRGHS WENCNGSPSA PGRPHLVNNE RRSVDDMPTY LSHTHSDFVN TWDQLQKSQL 180 DNKTIAVNGL GTGQKCQSEN LVGSIDWKPL KWTRSGSLSS RGSGFSHSSS SKSLGGVDSG 240 EGKLELQQKN LTPVQSPSGD AAACVTSPAP SDETSSRKKP RLAWGEGLAK YEKKKVEGPD 300 TSIDRAGAKI SVRNTEFNNF LSSNLADKSP RVLGFSDCAS PATPSSVACS SSPGVEEKSF 360 GKAANVDNDT SNLCGSPTLG SQNHLEGPSF NLEKLDINSI INMGSSLTNL LQADDPCTVD 420 SSFVRSTAIS KLLLWKSDVL KALEMTESEI DSLESELKLL KGDSRSRCPC PATSSSFPVE 480 EHGKACGEQE AASSLIPRPA PLQIDACGDV LVGKQPLCNG VLEEVNDDVK DGDIDSPGTA 540 TSKFMEPLSL EKAVSPSDVV KFHECSGDFG TVQLMSMGKV ILATGSGNAG TATTISAEGS 600 VLKRIDNDAH VPESSNSDVG DENVMYEMIL ATNKELANVA SEVFNKLLPK DQYNSEIGNV 660 ACTQSDSAIR KKIAIRKQYL RFKERVLTIK FKAFQNAWKE DLRSPSMRKY RAKSQKKYEF 720 SLRSAHGGYQ KHRSSIHSRL TSPAGNPILE PRAEMINFTS KLLLGSHGRL YRNALKMPAL 780 ILDEKEKKVS RFISSNGLVE DPCAIEKERA LINPWTSQEK EIFMAKLAAF GKDFRKIASF 840 LDHKTTADCV EFYYKNHKSE CFEKTKKNDL SKQQGKSAVN TYLLTSGKKR GRELNAASLD 900 VLGAASVIAA HAESGMRNRH TSGRILLRGR FDSKRSQLDD SIAERSSNFD IVGSDQDTVA 960 ADVLAGICGS FSSEAMSSCI TSSADPGEGY HHDWKFHKVD SVVKRPSTSD VLQNVDGDTC 1020 SDESCGEMES SHWTDEEKSA FLQAVLSYGK DFDMISRYVG TRSRDQCKVF FSKARKCLGL 1080 DLIHSRTRNI GTPMSDDANG GETDTEDACV QESSVVCSEK LGSKVEEDLP STIVSMNVDE 1140 SDLTREASLQ SDHNISEGNI ERLADHKDSV AAEVNFSNVD HTEPISECGA GDMDVDSNQA 1200 ESLHVQNNVA LANLSALENH VAEEGVSVAV SASHGGTGDC HPSLDASVEP KSGAAVLSTE 1260 GFGNNLEAQE TLSSKNVMDA RDTRCNAEIG SQVICRPDLD KSSGESIDKN SCLDFSFNSE 1320 GLRQVPLDLG SAGKPSILLF PNENFSAKNS ASHSDASQCD KICNQDRLSA TLAYQGNEDK 1380 QPNNAVSGHE PEHLSGKPSV DLAELQISTL KEMDIDIGHS QLPEVKRLST SDKGVTGLYL 1440 VQDYLQKCNG PKSPSEFPQL VQNLEQANSR PKSHSRSLSD TEKPCRNGNV KLFGQILNSS 1500 SQDDGKIRFR EQSMKSSNLN FRGHNNVDGN ASFSKFDQNI IFAPENVPRR SYGFWDGNRI 1560 QTGLSSLPDS EILVAKYPAA FVNYPASSSQ MQLQASQSIV RNTDRNMNGV SVFTPREISS 1620 NNGVMDYQVY GGHDCTKVVP FAMDMKRREM FSEMQRRNGF DAISNLQHQG RGMVGMNVVG 1680 TGVGGVVGGS CPNLSDPVAV LRMQYAKTEQ YGGQSGSIMR E

Sequence ? help Back to Top

Protein Sequence Length: 1721 aa Download sequence Send to blast

MPPEPLPWDR KDFYKERKHE RTQSLPQQPL TARWRESSSM SPYQHASFRE FTRWGSADFR  60
RPPGHGRQGS WHLFAEENGG HGYVPSRSSD KILDDENFRQ LDSRVDGKYS RNSRENNRGS  120
SSQRDWRGHS WENCNGSPSA PGRPHLVNNE RRSVDDMPTY LSHTHSDFVN TWDQLQKSQL  180
DNKTIAVNGL GTGQKCQSEN LVGSIDWKPL KWTRSGSLSS RGSGFSHSSS SKSLGGVDSG  240
EGKLELQQKN LTPVQSPSGD AAACVTSPAP SDETSSRKKP RLAWGEGLAK YEKKKVEGPD  300
TSIDRAGAKI SVRNTEFNNF LSSNLADKSP RVLGFSDCAS PATPSSVACS SSPGVEEKSF  360
GKAANVDNDT SNLCGSPTLG SQNHLEGPSF NLEKLDINSI INMGSSLTNL LQADDPCTVD  420
SSFVRSTAIS KLLLWKSDVL KALEMTESEI DSLESELKLL KGDSRSRCPC PATSSSFPVE  480
EHGKACGEQE AASSLIPRPA PLQIDACGDV LVGKQPLCNG VLEEVNDDVK DGDIDSPGTA  540
TSKFMEPLSL EKAVSPSDVV KFHECSGDFG TVQLMSMGKV ILATGSGNAG TATTISAEGS  600
VLKRIDNDAH VPESSNSDVG DENVMYEMIL ATNKELANVA SEVFNKLLPK DQYNSEIGNV  660
ACTQSDSAIR KKIAIRKQYL RFKERVLTIK FKAFQNAWKE DLRSPSMRKY RAKSQKKYEF  720
SLRSAHGGYQ KHRSSIHSRL TSPAGNPILE PRAEMINFTS KLLLGSHGRL YRNALKMPAL  780
ILDEKEKKVS RFISSNGLVE DPCAIEKERA LINPWTSQEK EIFMAKLAAF GKDFRKIASF  840
LDHKTTADCV EFYYKNHKSE CFEKTKKNDL SKQQGKSAVN TYLLTSGKKR GRELNAASLD  900
VLGAASVIAA HAESGMRNRH TSGRILLRGR FDSKRSQLDD SIAERSSNFD IVGSDQDTVA  960
ADVLAGICGS FSSEAMSSCI TSSADPGEGY HHDWKFHKVD SVVKRPSTSD VLQNVDGDTC  1020
SDESCGEMES SHWTDEEKSA FLQAVLSYGK DFDMISRYVG TRSRDQCKVF FSKARKCLGL  1080
DLIHSRTRNI GTPMSDDANG GETDTEDACV QESSVVCSEK LGSKVEEDLP STIVSMNVDE  1140
SDLTREASLQ SDHNISEGNI ERLADHKDSV AAEVNFSNVD HTEPISECGA GDMDVDSNQA  1200
ESLHVQNNVA LANLSALENH VAEEGVSVAV SASHGGTGDC HPSLDASVEP KSGAAVLSTE  1260
GFGNNLEAQE TLSSKNVMDA RDTRCNAEIG SQVICRPDLD KSSGESIDKN SCLDFSFNSE  1320
GLRQVPLDLG SAGKPSILLF PNENFSAKNS ASHSDASQCD KICNQDRLSA TLAYQGNEDK  1380
QPNNAVSGHE PEHLSGKPSV DLAELQISTL KEMDIDIGHS QLPEVKRLST SDKGVTGLYL  1440
VQDYLQKCNG PKSPSEFPQL VQNLEQANSR PKSHSRSLSD TEKPCRNGNV KLFGQILNSS  1500
SQDDGKIRFR EQSMKSSNLN FRGHNNVDGN ASFSKFDQNI IFAPENVPRR SYGFWDGNRI  1560
QTGLSSLPDS EILVAKYPAA FVNYPASSSQ MQLQASQSIV RNTDRNMNGV SVFTPREISS  1620
NNGVMDYQVY GGHDCTKVVP FAMDMKRREM FSEMQRRNGF DAISNLQHQG RGMVGMNVVG  1680
TGVGGVVGGS CPNLSDPVAV LRMQYAKTEQ YGGQSGSIMR E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-16	772	863	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-16	772	863	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20423	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016700569.1	0.0	PREDICTED: uncharacterized protein LOC107915891 isoform X1
Refseq	XP_016700570.1	0.0	PREDICTED: uncharacterized protein LOC107915891 isoform X1
TrEMBL	A0A1U8KIP6	0.0	A0A1U8KIP6_GOSHI; uncharacterized protein LOC107915891 isoform X1
STRING	Gorai.011G240800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein